RetrogeneDB ID: | retro_mmul_49 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:85370926..85371598(-) | ||
Located in intron of: | ENSMMUG00000003462 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029538 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HDAC3 | ||
Ensembl ID: | ENSMMUG00000012588 | ||
Aliases: | None | ||
Description: | histone deacetylase 3 [Source:RefSeq peptide;Acc:NP_001253426] |
Percent Identity: | 96.86 % |
Parental protein coverage: | 60.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRG |
MYEVGAESG.YYCLNVPLRDGIDDQSYK.LFQPVINQV.DFYQPTCIVLQCGADSLGCDRLGCFNLSIRG | |
Retrocopy | MYEVGAESGHYYCLNVPLRDGIDDQSYKYLFQPVINQVMDFYQPTCIVLQCGADSLGCDRLGCFNLSIRG |
Parental | HGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTR |
HGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTR | |
Retrocopy | HGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTR |
Parental | IENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYD |
IENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEA.AE.RGPEENYSRPEAPNEF.D | |
Retrocopy | IENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEANAEDRGPEENYSRPEAPNEFCD |
Parental | GDHDNDKESDVEI |
GDH.NDKESDVEI | |
Retrocopy | GDHNNDKESDVEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 24 .65 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 23 .24 RPM |
SRP007412_cerebellum | 0 .06 RPM | 30 .87 RPM |
SRP007412_heart | 0 .00 RPM | 18 .02 RPM |
SRP007412_kidney | 0 .00 RPM | 40 .14 RPM |
SRP007412_liver | 0 .04 RPM | 12 .75 RPM |
SRP007412_testis | 0 .34 RPM | 63 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000008662 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009948 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012588 | 1 retrocopy |
retro_mmul_49 ,
|
Procavia capensis | ENSPCAG00000010817 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016240 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007520 | 1 retrocopy |