Parental gene:

MMU.11950, ENSMMUG00000023012

Aliases:None
Description:vacuolar protein sorting-associated protein VTA1 homolog [Source:RefSeq peptide;Acc:NP_001248449]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:121484648..121562581(-)


>ENSMMUG00000023012
ATGGCCGCGCTTGCATCGCTGCCCCCGCTGCCCGCACAGTTTAAGAGCATACAGCATCATCTGAGGACGGCTCAGGAGCA
TGACAAGCGGGACCCTGTGGTGGCTTATTACTGTCGTTTATACGCAATGCAGACTGGAATGAAGATCGATAGTAAAACTC
CTGAATGTCGCAAATTTTTATCAAAGTTAATGGATCAGTTAGAAGCTCTAAAGAAGCAGTTGGGTGATAATGAAGCTATT
ACTCAAGAAATAGTGGGTTGTGCCCATTTGGAGAATTATGCTTTGAAAATGTTTTTGTATGCAGACAATGAAGATCGTGC
TGGGCGATTTCACAAAAACATGATCAAGTCCTTCTATACTGCAAGTCTTTTGATAGATGTCATAACAGTATTTGGAGAAC
TCACTGATGAAAATGTGAAACACAGGAAGTATGCCAGATGGAAGGCAACATACATCCATAATTGTTTGAAGAATGGGGAG
ACTCCTCAAGCAGGCCCTGTTGGAATTGAAGAAGATAATGATGTTGAAGAAAATGAAGATGCTGGAGCAGCCTCTCTGCC
CACTCAGCCAACTCAGCCATCATCATCTTCAACTTATGACCCAAGCAACATGCCGTCAGGCAACTATACTGGAATACAGA
TTCCTCCGGGTGCACATGCTCCAGCTAATACACCAGCAGAAGTGCCTCATAGCACAGGTGTAGCAAGTAATACTATCCAA
CCTACTCCACAGACTATACCTGCCATTGATCCCGCACTTTTCAATACAATTTCCCAGGGGGATATTCGTCTAACCCCAGA
GGACTTTGCTAGAGCTCAGAAGTACTGCAAATATGCTGGCAGTGCTCTGCAGTATGAAGATGTAAGTACTGCTGTACAGA
ATCTACAAAAGGCGCTCAAGTTACTGACGACAGGCAGAGAATGA

Library Parental gene expression (RPM)
SRP007412_brain 29 .58 RPM
SRP007412_brain_prefrontal_cortex 23 .64 RPM
SRP007412_cerebellum 26 .15 RPM
SRP007412_heart 10 .89 RPM
SRP007412_kidney 14 .32 RPM
SRP007412_liver 6 .33 RPM
SRP007412_testis 11 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000009844 ortholog_one2one 1 retrogene
retro_hsap_4088,
Gorilla gorilla ENSGGOG00000015524 ortholog_one2one 1 retrogene
retro_ggor_2742,
Microcebus murinus ENSMICG00000004420 ortholog_one2one 2 retrogenes
retro_mmur_1290, retro_mmur_290,
Nomascus leucogenys ENSNLEG00000015053 ortholog_one2one 1 retrogene
retro_nleu_1911,
Oryctolagus cuniculus ENSOCUG00000002554 ortholog_one2one 10 retrogenes
retro_ocun_1543, retro_ocun_1689, retro_ocun_1790, retro_ocun_1810, retro_ocun_1821, retro_ocun_1832, retro_ocun_1848, retro_ocun_1853, retro_ocun_1864, retro_ocun_965,
Pan troglodytes ENSPTRG00000018662 ortholog_one2one 1 retrogene
retro_ptro_2773,
Rattus norvegicus ENSRNOG00000011540 ortholog_one2one 1 retrogene
retro_rnor_799,
Tursiops truncatus ENSTTRG00000014998 ortholog_one2one 1 retrogene
retro_ttru_1825,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_751 65.96 75.90
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMMUG00000023012 retrocopies