RetrogeneDB ID: | retro_ocun_1810 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018979:226140..226849(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VTA1 | ||
Ensembl ID: | ENSOCUG00000002554 | ||
Aliases: | None | ||
Description: | Vps20-associated 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20954] |
Percent Identity: | 78.42 % |
Parental protein coverage: | 77.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | KKQLGDNEAITQEIVGSAHLENYALKMFLYADNEDRAG-RFHKNMIKSFYTASLLIDVITVFG-ELTDEN |
KKQLGDNEAITQ..VG.AHL.NY.LKMF.YADNE..AG.RFHKNMIK.FYTASLLIDVITVF....TDEN | |
Retrocopy | KKQLGDNEAITQGAVGFAHLGNYDLKMFIYADNEHCAG<RFHKNMIKFFYTASLLIDVITVFD<HNTDEN |
Parental | VKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDGEENEDAGVASLPTQ-PPQPSSSSAFDPGSMPSG |
VKHRKYARWKATYIHNCLKN.ETPQAGP..IEED.DGEENEDA.VASLP.Q..PQPSSSSA..PGSMPS. | |
Retrocopy | VKHRKYARWKATYIHNCLKNEETPQAGPIAIEEDTDGEENEDAVVASLPIQ>TPQPSSSSAVVPGSMPSD |
Parental | SYSGIQIPPGAHAPANTPAEVPHGTGVTSNTIQPAPQTIPAIDPALFSTVSQGDIRLTPEDFARAQKYCK |
SYS.IQIP.GAHA.A.TPA.VPH..GVT.NTIQP...TIPAID.A.FSTVSQG.I.LTPE...RAQKYCK | |
Retrocopy | SYS*IQIPLGAHALAYTPAKVPHSMGVTKNTIQPTL*TIPAIDSACFSTVSQGHIHLTPEYVVRAQKYCK |
Parental | YAGSALQYEDVSTA-VQNLQKALKLLTTGRE |
Y..SALQYEDVSTA..QN.QK.LKL..T.RE | |
Retrocopy | YTSSALQYEDVSTA<LQNIQKDLKLPMTNRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .26 RPM |
SRP017611_liver | 0 .00 RPM | 4 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000009844 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015524 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004420 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023012 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015053 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002554 | 10 retrocopies |
retro_ocun_1543, retro_ocun_1689, retro_ocun_1790, retro_ocun_1810 , retro_ocun_1821, retro_ocun_1832, retro_ocun_1848, retro_ocun_1853, retro_ocun_1864, retro_ocun_965,
|
Pan troglodytes | ENSPTRG00000018662 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011540 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014998 | 1 retrocopy |