Parental gene: | VTA1, ENSOCUG00000002554 |
| Aliases: | None |
| Description: | Vps20-associated 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20954] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 12:132667793..132772205(+) |
>ENSOCUG00000002554
ATGGCTGCGCTGGCTCCGCTGCCCCCGCTCCCCCCACAGTTTAAGAGCATACAGCATCACCTGAGGACGGCTCAGGAGCA
TGACAAGCGGGACCCGGTGGTGGCCTATTACTGTCGGTTATATGCCATGCAAACTGGAATGAAGATTGATAGTAAAACTC
CTGAATGTCGTAAATTTTTATCAAAATTAATGGATCAGTTAGAAGCTCTTAAGAAACAGTTGGGTGATAATGAAGCTATT
ACTCAAGAAATAGTTGGCTCTGCCCATTTGGAGAATTATGCTTTGAAAATGTTTTTATATGCAGACAATGAAGATCGTGC
TGGGCGATTTCACAAAAACATGATCAAGTCCTTCTATACTGCAAGTCTTTTAATAGATGTCATAACAGTGTTTGGAGAAC
TCACTGATGAAAATGTGAAACACAGAAAGTATGCAAGGTGGAAGGCAACATATATCCATAATTGCTTAAAGAATGGGGAG
ACTCCTCAAGCAGGCCCTGTTGGAATTGAAGAAGATAATGATGGTGAAGAAAATGAAGATGCCGGAGTAGCCTCTTTGCC
CACTCAACCACCTCAGCCATCATCATCCTCAGCATTTGACCCAGGCAGCATGCCATCAGGCAGCTATAGTGGCATACAGA
TTCCTCCGGGTGCACACGCTCCAGCCAACACACCAGCGGAAGTGCCTCATGGCACAGGTGTAACAAGTAATACTATCCAA
CCTGCTCCACAGACTATTCCAGCCATTGATCCTGCACTTTTCAGTACAGTTTCCCAGGGCGATATCCGCCTCACCCCTGA
GGACTTTGCGAGAGCTCAGAAGTACTGCAAATATGCCGGCAGTGCTTTGCAATATGAAGATGTAAGCACTGCCGTTCAGA
ATCTACAGAAAGCCCTCAAGTTACTGACGACCGGCAGAGAATGA
ATGGCTGCGCTGGCTCCGCTGCCCCCGCTCCCCCCACAGTTTAAGAGCATACAGCATCACCTGAGGACGGCTCAGGAGCA
TGACAAGCGGGACCCGGTGGTGGCCTATTACTGTCGGTTATATGCCATGCAAACTGGAATGAAGATTGATAGTAAAACTC
CTGAATGTCGTAAATTTTTATCAAAATTAATGGATCAGTTAGAAGCTCTTAAGAAACAGTTGGGTGATAATGAAGCTATT
ACTCAAGAAATAGTTGGCTCTGCCCATTTGGAGAATTATGCTTTGAAAATGTTTTTATATGCAGACAATGAAGATCGTGC
TGGGCGATTTCACAAAAACATGATCAAGTCCTTCTATACTGCAAGTCTTTTAATAGATGTCATAACAGTGTTTGGAGAAC
TCACTGATGAAAATGTGAAACACAGAAAGTATGCAAGGTGGAAGGCAACATATATCCATAATTGCTTAAAGAATGGGGAG
ACTCCTCAAGCAGGCCCTGTTGGAATTGAAGAAGATAATGATGGTGAAGAAAATGAAGATGCCGGAGTAGCCTCTTTGCC
CACTCAACCACCTCAGCCATCATCATCCTCAGCATTTGACCCAGGCAGCATGCCATCAGGCAGCTATAGTGGCATACAGA
TTCCTCCGGGTGCACACGCTCCAGCCAACACACCAGCGGAAGTGCCTCATGGCACAGGTGTAACAAGTAATACTATCCAA
CCTGCTCCACAGACTATTCCAGCCATTGATCCTGCACTTTTCAGTACAGTTTCCCAGGGCGATATCCGCCTCACCCCTGA
GGACTTTGCGAGAGCTCAGAAGTACTGCAAATATGCCGGCAGTGCTTTGCAATATGAAGATGTAAGCACTGCCGTTCAGA
ATCTACAGAAAGCCCTCAAGTTACTGACGACCGGCAGAGAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 4 .08 RPM |
| SRP017611_kidney | 12 .26 RPM |
| SRP017611_brain | 16 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000009844 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015524 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000004420 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000023012 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015053 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000018662 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000011540 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000014998 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_965 | 77.12 | 75.90 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1543 | 81.05 | 61.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1689 | 78.89 | 57.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1790 | 76.76 | 77.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1810 | 78.42 | 77.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1821 | 78.90 | 75.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ocun_1832 | 77.59 | 77.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ocun_1848 | 80.63 | 61.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ocun_1853 | 81.15 | 61.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ocun_1864 | 78.48 | 75.90 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000002554 retrocopies