Parental gene: | ENSMODG00000005339 |
| Aliases: | None |
| Description: | None |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 1:381394680..381405301(-) |
>ENSMODG00000005339
ATGGCGAGCGCATCTGCCCTCGCGGGGAGCTCTGCCCTAGGGCTGGGCGCCGTTGGGGGGACCGGTCCCTGGGGCAGCGC
GGCCGGTGGCCCATCCCGCTATGTGGCCGGGATGCAGGAGCTGTTTCGGAGCCATAGCAAGACTCGCGAATTCCCGGCGC
ACAGCGCCAAGGTGCACTCGGTGGCCTGGAGCTGTGACGGCCGACGCCTGGCCTCGGGCTCCTTCGACAAGACGGCCAGC
GTCTTTTTGCTCGAGAAGGACCGCCTGGTAAAAGAAAATAACTACCGAGGGCATGGGGACAGTGTTGATCAGCTTTGTTG
GCATCCAAGTAATCCAGACCTCTTTGTCACTGCATCTGGGGACAAAACTATTCGCATCTGGGATGTTAGAACTACAAAAT
GCATTGCTTCTGTGAATACTAAAGGGGAGAATATTAACATTTGCTGGAGTCCTGATGGTCAGACTATTGCTGTGGGCAAT
AAAGATGATGTGGTAACTTTCATTGATGCTAAAACCCATCGTTCAAAAGCAGAGGAGCAATTTAAATTTGAGGTCAATGA
AATCTCCTGGAATAATGATAACAATATGTTCTTCCTTACTAATGGCAATGGTTGTATCAACATTCTCAGCTATCCTGAGC
TGAAGCCTGTGCAGTCCATTAATGCCCATCCTTCCAATTGTATCTGCATCAAATTTGACCCCACAGGGAAGTACTTTGCC
ACAGGAAGTGCTGATGCACTGGTTAGCCTTTGGGATGTTGATGAGTTGGTGTGTGTGAGATGTTTTTCCAGATTGGACTG
GCCAGTGAGAACCCTCAGCTTTAGCCATGATGGGAAGATGCTTGCATCAGCATCTGAGGATCACTTTATTGACATTGCTG
AAGTAGAGACAGGTGATAAGCTCTGGGAGGTGCAATGTGAGTCACCAACGTTCACGGTGGCCTGGCATCCCAAAAGGCCA
CTGCTGGCATTTGCTTGTGATGACAAAGATGGCAAATATGACAGCAGCCGGGAAGCAGGGACTGTGAAGTTGTTTGGGCT
TCCTAATGACTCTTAA
ATGGCGAGCGCATCTGCCCTCGCGGGGAGCTCTGCCCTAGGGCTGGGCGCCGTTGGGGGGACCGGTCCCTGGGGCAGCGC
GGCCGGTGGCCCATCCCGCTATGTGGCCGGGATGCAGGAGCTGTTTCGGAGCCATAGCAAGACTCGCGAATTCCCGGCGC
ACAGCGCCAAGGTGCACTCGGTGGCCTGGAGCTGTGACGGCCGACGCCTGGCCTCGGGCTCCTTCGACAAGACGGCCAGC
GTCTTTTTGCTCGAGAAGGACCGCCTGGTAAAAGAAAATAACTACCGAGGGCATGGGGACAGTGTTGATCAGCTTTGTTG
GCATCCAAGTAATCCAGACCTCTTTGTCACTGCATCTGGGGACAAAACTATTCGCATCTGGGATGTTAGAACTACAAAAT
GCATTGCTTCTGTGAATACTAAAGGGGAGAATATTAACATTTGCTGGAGTCCTGATGGTCAGACTATTGCTGTGGGCAAT
AAAGATGATGTGGTAACTTTCATTGATGCTAAAACCCATCGTTCAAAAGCAGAGGAGCAATTTAAATTTGAGGTCAATGA
AATCTCCTGGAATAATGATAACAATATGTTCTTCCTTACTAATGGCAATGGTTGTATCAACATTCTCAGCTATCCTGAGC
TGAAGCCTGTGCAGTCCATTAATGCCCATCCTTCCAATTGTATCTGCATCAAATTTGACCCCACAGGGAAGTACTTTGCC
ACAGGAAGTGCTGATGCACTGGTTAGCCTTTGGGATGTTGATGAGTTGGTGTGTGTGAGATGTTTTTCCAGATTGGACTG
GCCAGTGAGAACCCTCAGCTTTAGCCATGATGGGAAGATGCTTGCATCAGCATCTGAGGATCACTTTATTGACATTGCTG
AAGTAGAGACAGGTGATAAGCTCTGGGAGGTGCAATGTGAGTCACCAACGTTCACGGTGGCCTGGCATCCCAAAAGGCCA
CTGCTGGCATTTGCTTGTGATGACAAAGATGGCAAATATGACAGCAGCCGGGAAGCAGGGACTGTGAAGTTGTTTGGGCT
TCCTAATGACTCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 66 .39 RPM |
| SRP007412_cerebellum | 68 .23 RPM |
| SRP007412_heart | 67 .18 RPM |
| SRP007412_kidney | 84 .28 RPM |
| SRP007412_liver | 84 .59 RPM |
| SRP007412_testis | 257 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006495 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000001068 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000025872 | possible_ortholog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000003503 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000010757 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_164 | 77.33 | 91.74 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000005339 retrocopies