Parental gene: | TAF1D, ENSMODG00000008546 |
| Aliases: | None |
| Description: | TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa [Source:HGNC Symbol;Acc:28759] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 4:265451200..265457974(+) |
>ENSMODG00000008546
ATGTCTTCTGATCCCATTTTACCTTTGGCTTCAACTAGTTCATTAGTAAACAATGAAAGTGATGACTCGGATTCTAGCAA
CAGTTTATTCAAAACTCAGTGTGATCCCATCTCACCCAGTCGAGAACCTAGAAACATATCTACCTGTAATACAATTCATT
TACCTCCAAATACTTGGTTGAGAGATTATTCAAGTGACTCCTCTTCAGAACTAGAACCATTTAATTTGAAAGTTGTTTTT
GAAAATTGGAAGAAAAAGAAAAGGAAAATACAAAAAAAGAAAAGAAAATACAAGCCATCTGGAAGGCCAAAGGGAAGGCC
AAAAGGAAGCACTAAAACAACTCAATCTTTAGCCGTTATGTCGAAAAAGGACCTTTTCAAAGATAAAGGTTTACAGTTCC
CTTTGGTAGAATCAGAGAATGGAAGAAAACCATTACTTTGGAAGAAAATTTTAGGCTTTGAGCAAGCAGTTGCAAGAGGG
TTTTTCAACTATGTTAAGGAACAGAAATATGAATCCCACCTCAGAGAGGCTTTGAAGCATCTGGGTGCTAGTGAAGATTT
AGACAAAGAAGACTTTGGTGTACGGAGATATAAATATTTAGAAGATGATGATGAATCTATTTCTCCTATAGAAGATTCCA
ATGCAGAATACAACCAGTTGGATGATCAAGATGACTGTGATGTCAAATTAGTGGACAATAGTTGTTTCATAATAAGTACT
GAATTGCCCGAGAAGACAAAGTCAAAGATGAAAAAGACTGCTAAAGACTAG
ATGTCTTCTGATCCCATTTTACCTTTGGCTTCAACTAGTTCATTAGTAAACAATGAAAGTGATGACTCGGATTCTAGCAA
CAGTTTATTCAAAACTCAGTGTGATCCCATCTCACCCAGTCGAGAACCTAGAAACATATCTACCTGTAATACAATTCATT
TACCTCCAAATACTTGGTTGAGAGATTATTCAAGTGACTCCTCTTCAGAACTAGAACCATTTAATTTGAAAGTTGTTTTT
GAAAATTGGAAGAAAAAGAAAAGGAAAATACAAAAAAAGAAAAGAAAATACAAGCCATCTGGAAGGCCAAAGGGAAGGCC
AAAAGGAAGCACTAAAACAACTCAATCTTTAGCCGTTATGTCGAAAAAGGACCTTTTCAAAGATAAAGGTTTACAGTTCC
CTTTGGTAGAATCAGAGAATGGAAGAAAACCATTACTTTGGAAGAAAATTTTAGGCTTTGAGCAAGCAGTTGCAAGAGGG
TTTTTCAACTATGTTAAGGAACAGAAATATGAATCCCACCTCAGAGAGGCTTTGAAGCATCTGGGTGCTAGTGAAGATTT
AGACAAAGAAGACTTTGGTGTACGGAGATATAAATATTTAGAAGATGATGATGAATCTATTTCTCCTATAGAAGATTCCA
ATGCAGAATACAACCAGTTGGATGATCAAGATGACTGTGATGTCAAATTAGTGGACAATAGTTGTTTCATAATAAGTACT
GAATTGCCCGAGAAGACAAAGTCAAAGATGAAAAAGACTGCTAAAGACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013436 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000011431 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000001096 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002521 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000005874 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000014258 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_1216 | 84.81 | 61.72 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000008546 retrocopies