Parental gene: | Srm, ENSMUSG00000006442 |
| Aliases: | Srm, AA407669, SpdST, SpdSy |
| Description: | spermidine synthase [Source:MGI Symbol;Acc:MGI:102690] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 4:148591502..148594993(+) |
>ENSMUSG00000006442
ATGGAGCCTGGCCCCGACGGCCCAGCCGCGCCCGGCCCCGCCGCCATCCGTGAGGGCTGGTTCCGAGAGACCTGCAGCCT
GTGGCCCGGCCAGGCCCTGTCGCTGCAAGTGGAGCAGCTGCTTCACCACCGGCGATCGCGGTACCAAGACATCCTCGTCT
TCCGCAGTAAAACCTACGGCAACGTGCTGGTTCTGGATGGCGTCATCCAGTGTACTGAGAGGGATGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCGCTCTGCAGCCACCCCAACCCGCGGAAGGTGCTGATCATCGGGGGTGGAGATGGGGGCGT
CCTACGGGAAGTGGTGAAGCACCCCTCTGTGGAGTCGGTGGTCCAGTGCGAGATTGATGAGGATGTCATTGAAGTCTCTA
AGAAGTTCCTGCCTGGCATGGCCGTTGGCTTCTCCAGCTCAAAGCTGACTCTCCACGTGGGCGATGGCTTTGAGTTCATG
AAACAGAACCAAGATGCCTTTGACGTCATCATCACCGACTCCTCAGACCCCATGGGCCCTGCTGAGAGCCTCTTCAAGGA
GTCCTATTACCAGCTCATGAAGACAGCACTCAAAGAAGATGGCATCCTGTGCTGCCAGGGTGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGAGGCACTTCTGCAAATCTCTCTTCCCCGTGGTGGACTACGCCTACTGTAGCATTCCTACC
TATCCCAGCGGCCAGATCGGCTTCATGCTGTGTAGCAAAAACCCGAGCACCAACTTCCGGGAGCCAGTGCAGCAGTTGAC
ACAGGCCCAGGTGGAGCAGATGCAGCTGAAATACTATAACTCGGACATGCACCGTGCCGCCTTCGTACTGCCCGAGTTCA
CCCGGAAGGCCCTCAATGACATAAGCTGA
ATGGAGCCTGGCCCCGACGGCCCAGCCGCGCCCGGCCCCGCCGCCATCCGTGAGGGCTGGTTCCGAGAGACCTGCAGCCT
GTGGCCCGGCCAGGCCCTGTCGCTGCAAGTGGAGCAGCTGCTTCACCACCGGCGATCGCGGTACCAAGACATCCTCGTCT
TCCGCAGTAAAACCTACGGCAACGTGCTGGTTCTGGATGGCGTCATCCAGTGTACTGAGAGGGATGAGTTCTCCTACCAG
GAGATGATCGCCAACCTGCCGCTCTGCAGCCACCCCAACCCGCGGAAGGTGCTGATCATCGGGGGTGGAGATGGGGGCGT
CCTACGGGAAGTGGTGAAGCACCCCTCTGTGGAGTCGGTGGTCCAGTGCGAGATTGATGAGGATGTCATTGAAGTCTCTA
AGAAGTTCCTGCCTGGCATGGCCGTTGGCTTCTCCAGCTCAAAGCTGACTCTCCACGTGGGCGATGGCTTTGAGTTCATG
AAACAGAACCAAGATGCCTTTGACGTCATCATCACCGACTCCTCAGACCCCATGGGCCCTGCTGAGAGCCTCTTCAAGGA
GTCCTATTACCAGCTCATGAAGACAGCACTCAAAGAAGATGGCATCCTGTGCTGCCAGGGTGAGTGCCAGTGGCTGCACC
TGGACCTCATCAAGGAGATGAGGCACTTCTGCAAATCTCTCTTCCCCGTGGTGGACTACGCCTACTGTAGCATTCCTACC
TATCCCAGCGGCCAGATCGGCTTCATGCTGTGTAGCAAAAACCCGAGCACCAACTTCCGGGAGCCAGTGCAGCAGTTGAC
ACAGGCCCAGGTGGAGCAGATGCAGCTGAAATACTATAACTCGGACATGCACCGTGCCGCCTTCGTACTGCCCGAGTTCA
CCCGGAAGGCCCTCAATGACATAAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 28 .90 RPM |
| SRP007412_cerebellum | 20 .58 RPM |
| SRP007412_heart | 10 .12 RPM |
| SRP007412_kidney | 10 .49 RPM |
| SRP007412_liver | 22 .91 RPM |
| SRP007412_testis | 5 .53 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002354 | possible_ortholog | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000013348 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000014385 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007002 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019321 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_3271 | 87.01 | 50.99 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000006442 retrocopies