Parental gene:

Chm, ENSMUSG00000025531

Aliases:Chm, Rep-1
Description:choroidermia [Source:MGI Symbol;Acc:MGI:892979]
Organism:Mouse (Mus musculus)
Coordinates:X:113040594..113185517(-)


>ENSMUSG00000025531
ATGGCGGATAATCTCCCTTCGGACTTTGATGTGATCGTAATAGGGACGGGTCTGCCTGAATCCATCATTGCAGCTGCATG
TTCAAGGAGTGGCCAGAGGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTCAGCTTTTCAG
GACTGTTGTCCTGGCTAAAGGAATACCAGGAAAATAGTGATGTTGTGACTGAAAATTCAATGTGGCAAGAACAGATACTT
GAAAACGAAGAAGCTATTCTTCTTAGTAGCAAGGACAAAACAATTCAACATGTAGAAGTATTTTGTTATGCCAGTCAGGA
TTTGCACAAAGATGTTGAAGAAGCTGGTGCACTGCAGAAAAATCCTGCTTCAGTGATGTCCGCACAGGCCACAGAGGCCG
CAGAGGCTGCAGAGGCCGCAGAGGCTGCAGAGGCCACAGAGGCTGCAGAGGCCGCTTGCCTTCCTACTGCAGAGGAGTCC
TTAAGCACGAGGAGCTGTGAACTACCTGCAGAACAAAGTCAGTGCACGGGGCCAGAGAGTTCACCACAAGTAAATGATGC
TGAAGTAGGAGAGAAAGAAACTCAGAGTGATGCAAAAAGTTCAACAGAACAATCAAGTGAAATTTTGCCTAAAGTACAAG
ACAACACAGAGACACCAAAGAGAAATGTAATTACTTACTCACAGATTATTAAAGAAGGCCGAAGATTTAACATTGATTTA
GTATCAAAACTTCTCTATTCTCGGGGATTACTAATTGATCTTCTAATCAAATCAAATGTTAGTCGGTATGCAGAGTTTAA
AAACATTACGAGGATTCTTGCATTTCGAGAAGGAACTGTGGAACAGGTCCCCTGTTCCAGAGCAGATGTCTTCAATAGCA
AACAACTTACTATGGTAGAAAAGCGAATGCTTATGAAATTTCTTACATTTTGTGTGGAATATGAAGACCATCCCGATGAG
TACAAAGCATACGAGGAAACTACATTTTCTGAATACTTAAAAACTCAAAAATTAACCCCCAACCTACAATATTTTGTCCT
GCACTCAATTGCAATGACATCAGAGACAACAAGCAGTACTGTAGATGGTCTCAAAGCTACTAAAAAGTTTCTTCAGTGTC
TTGGGCGGTATGGCAACACTCCATTTCTGTTTCCTTTATATGGCCAAGGAGAACTTCCACAGTGTTTTTGCAGAATGTGT
GCTGTGTTTGGTGGAATCTATTGTCTTCGCCATTCAGTACAGTGCCTTGTAGTGGACAAAGAATCCAGAAAATGTAAAGC
AATTGTAGATCAGTTTGGTCAAAGGATAATCTCTAAACATTTCGTTATTGAAGACAGTTACCTTTCTGAGAATACATGTT
CCGGTGTACAGTACAGGCAAATTTCCAGGGCAGTCCTGATTACAGATGGATCAGTACTAAAACCCGATTCTGATCAACAG
GTCTCCATTTTGACAGTGCCAGCAGAAGAGTCAGGAAGTTTTGCTGTTCGAGTCATTGAGTTATGCTCTTCAACAATGAC
ATGCATGAAAGGCACATACTTGGTACATTTGACTTGCATGTCTTCTAAAACAGCAAGAGAAGATTTAGAACGAGTAGTCC
AGAAATTGTTTACTCCATATACAGAAATCGAAGCAGAAAATGAACAGGTTGAAAAGCCAAGAATTCTATGGGCACTCTAC
TTCAATATGAGAGACTCTTCGGATATCAGCAGAGATTGTTATAATGATTTACCGTCCAATGTCTATGTGTGCTCTGGCCC
TGACTGTAATCTAGGAAATGATAATGCAGTCCAACAGGCGGAAACAGTTTTCCAGAAAATCTGCCCAAATGAAGACTTCT
GTCCAGCCCCACCAAATCCTGAAGATATTATTCTTGATGGAGACAGCTCACAACAAGAAGTTTCAGAATCCAGTGTCATA
CCAGAAACCAACTCAGAAACTCCCAAGGAAAGTACAGTCCTAGGAGACTCAGAAGAGCCCTCTGAATAG

Library Parental gene expression (RPM)
SRP007412_brain 40 .42 RPM
SRP007412_cerebellum 23 .36 RPM
SRP007412_heart 10 .90 RPM
SRP007412_kidney 16 .07 RPM
SRP007412_liver 9 .15 RPM
SRP007412_testis 1 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010190 ortholog_one2one 1 retrogene
retro_amel_733,
Bos taurus ENSBTAG00000009598 ortholog_one2one 1 retrogene
retro_btau_227,
Canis familiaris ENSCAFG00000017406 ortholog_one2one 1 retrogene
retro_cfam_1873,
Equus caballus ENSECAG00000019201 ortholog_one2one 1 retrogene
retro_ecab_36,
Felis catus ENSFCAG00000030652 ortholog_one2one 1 retrogene
retro_fcat_1744,
Homo sapiens ENSG00000188419 ortholog_one2one 1 retrogene
retro_hsap_56,
Gorilla gorilla ENSGGOG00000022912 ortholog_one2one 1 retrogene
retro_ggor_488,
Loxodonta africana ENSLAFG00000000523 ortholog_one2one 1 retrogene
retro_lafr_441,
Myotis lucifugus ENSMLUG00000011286 ortholog_one2one 1 retrogene
retro_mluc_138,
Macaca mulatta ENSMMUG00000016776 ortholog_one2one 1 retrogene
retro_mmul_460,
Monodelphis domestica ENSMODG00000014364 ortholog_many2many 1 retrogene
retro_mdom_1776,
Mustela putorius furo ENSMPUG00000001194 ortholog_one2one 1 retrogene
retro_mputfur_831,
Mus musculus ENSMUSG00000021218 within_species_paralog 2 retrogenes
retro_mmus_2971, retro_mmus_360,
Nomascus leucogenys ENSNLEG00000002762 ortholog_one2one 1 retrogene
retro_nleu_120,
Oryctolagus cuniculus ENSOCUG00000012819 ortholog_one2one 1 retrogene
retro_ocun_893,
Pongo abelii ENSPPYG00000020520 ortholog_one2one 1 retrogene
retro_pabe_215,
Pan troglodytes ENSPTRG00000022071 ortholog_one2one 1 retrogene
retro_ptro_400,
Rattus norvegicus ENSRNOG00000000161 ortholog_one2one 1 retrogene
retro_rnor_981,
Sarcophilus harrisii ENSSHAG00000017568 ortholog_many2many 1 retrogene
retro_shar_127,
Ictidomys tridecemlineatus ENSSTOG00000022111 ortholog_one2one 1 retrogene
retro_itri_870,
Vicugna pacos ENSVPAG00000001963 ortholog_one2one 1 retrogene
retro_vpac_231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_284 71.96 64.65
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Download FASTA sequences of all ENSMUSG00000025531 retrocopies