Parental gene:

CHM, ENSCAFG00000017406

Aliases:None
Description:choroideremia (Rab escort protein 1) [Source:HGNC Symbol;Acc:1940]
Organism:Dog (Canis familiaris)
Coordinates:X:66635933..66880353(-)


>ENSCAFG00000017406
ATGGCGGATAATCTCCCTTCGGAGTTTGATGTGATCGTAATAGGGACGGGTTTGCCTGAGTCCATCATTGCAGCTGCATG
TTCAAGAAGTGGCCAGAGGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTTAGCTTTTCAG
GAATACTATCCTGGCTAAAGGAATACCAGGAAAACAGTGACATTGTGAATGAAGGCCCAGCATGGCAAGAGCAGATTCTT
GAAAATGAAGAAGCCATTGCTCTTAGCAGGAAGGATAAAACCATTCAACATGTGGAAGTGTTTTGTTATGCCAGTCAGGA
TTTGCATGAAGAAGTTGAAGAAGCTGGTGCACTGCAGAAAAATCATGCTTCTGTGATATCTGAGAACCCTACAGAAGCTG
TACATTCTGCCTATCTGCCTTCAGAAGATGAGTCACTATGCATTGCGAGCTGTGAAATGCTCACAGAACAAACTCCAAGC
AGTGATCTAGAGACTGCCCTAGAAATAAGCAATGTGAAGGTAACAGGAGAAACAGAAAAACATGATGATAAAACTTGTAT
GAAGTCAGCTTCAGAAGAAGAAACAAGTAAAAATGTGCCTACAACAGAAGGCACTGCATTGCAACCAAAGAAAACTAGGA
TTACTTACTCACAAATTATTAAAGAAGGCAGGAGGTTTAATATTGATTTGGTATCAAAACTGCTGTATTCTCGAGGATTG
CTAATTGATCTTTTAATCAAATCTAACGTAAGTCGATATGCAGAGTTCAAAAATATTACCAGGATTCTTGCATTTCGAGA
AGGAAGAGTGGAACAGGTTCCTTGTTCTAGAGCCGATGTCTTTAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGC
TAATGAAGTTTCTTACATTTTGTATGGAATATGAAAAACATCCTGATGAATATAAAGCCTATGAGGAGATTACATTTTCT
GAGTATTTAAAAACTCAAAAATTAACCCCCAACCTCCAGTACTTTGTCCTGCATTCAATTGCGATGACATCAGAGACAGC
CAGCAATACCATAGACGGTCTCAAAGCTACCAAAAACTTTCTTCACTGTCTTGGACGGTATGGCAACACTCCATTTCTGT
TTCCTTTATATGGCCAAGGAGAACTTCCTCAGTGTTTCTGCAGGATGTGTGCAGTGTTTGGTGGAATCTATTGTCTTCGC
CATTCAGTACAGTGCCTTGTTGTGGACAAGGAATCCAGAAAATGTAAAGCAATCATAGATCAGTTTGGTCAGAGAATAAT
CTCTAAGCATTTCCTTGTGGAGGACAGTTACTTTTCTGAGAACACATGCTCACATGTACAATACCGGCAGATCTCCAGGT
CAGTTCTGATTACAGATAGATCTGTACTAAAAACGGATTCAGATCAACAGATTTCCATTTTGACAGTGCCAGGAGAGGAA
CCAGGAACTTTTGCTGTTCGAGTCATTGAGTTATGTTCTTCAACAATGACATGCATGAAAGGCACATATTTGGTTCATTT
AACTTGTACATCTTCTAAAACAGCAAGAGAAGATTTAGAACCAGTTGTGCAGAAATTATTTACTCCATATACCGAAACAG
AGACAGAAAATGAAGAAGTTGAAAAACCGAGGCTTCTATGGGCTCTTTACTTCAATATGAGAGATTCTTCAGACGTCAGC
AGGAACTCTTATAATGATTTACCATCCAACGTTTATGTCTGCTCTGGCCCAGACAGTGGTTTAGGAAATGATAATGCAGT
CAAACAGGCTGAAACACTTTTCCAGCTAATCTGCCCCAATGAAGACTTCTGTCCACCCCCACCAAATCCTGAAGATATTA
TCACTGATGGAGACAGTTTACAATCAGAGGCTTCTGAAGCCAGTGTCATACTAGAAGCTAACTCAGAGACTCCCAAAGAA
AGCGCAAGCTTGGGAAACCCAGAGGAGGCCTCTCAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 29 .69 RPM
SRP017611_kidney 24 .24 RPM
SRP017611_liver 6 .96 RPM
SRP012049_cerebellum 41 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010190 ortholog_one2one 1 retrogene
retro_amel_733,
Bos taurus ENSBTAG00000009598 ortholog_one2one 1 retrogene
retro_btau_227,
Canis familiaris ENSCAFG00000005223 within_species_paralog 2 retrogenes
retro_cfam_2196, retro_cfam_886,
Equus caballus ENSECAG00000019201 ortholog_one2one 1 retrogene
retro_ecab_36,
Felis catus ENSFCAG00000030652 ortholog_one2one 1 retrogene
retro_fcat_1744,
Homo sapiens ENSG00000188419 ortholog_one2one 1 retrogene
retro_hsap_56,
Gorilla gorilla ENSGGOG00000022912 ortholog_one2one 1 retrogene
retro_ggor_488,
Loxodonta africana ENSLAFG00000000523 ortholog_one2one 1 retrogene
retro_lafr_441,
Myotis lucifugus ENSMLUG00000011286 ortholog_one2one 1 retrogene
retro_mluc_138,
Macaca mulatta ENSMMUG00000016776 ortholog_one2one 1 retrogene
retro_mmul_460,
Monodelphis domestica ENSMODG00000014364 ortholog_one2many 1 retrogene
retro_mdom_1776,
Mustela putorius furo ENSMPUG00000001194 ortholog_one2one 1 retrogene
retro_mputfur_831,
Mus musculus ENSMUSG00000025531 ortholog_one2one 1 retrogene
retro_mmus_284,
Nomascus leucogenys ENSNLEG00000002762 ortholog_one2one 1 retrogene
retro_nleu_120,
Oryctolagus cuniculus ENSOCUG00000012819 ortholog_one2one 1 retrogene
retro_ocun_893,
Pongo abelii ENSPPYG00000020520 ortholog_one2one 1 retrogene
retro_pabe_215,
Pan troglodytes ENSPTRG00000022071 ortholog_one2one 1 retrogene
retro_ptro_400,
Rattus norvegicus ENSRNOG00000000161 ortholog_one2one 1 retrogene
retro_rnor_981,
Sarcophilus harrisii ENSSHAG00000017568 ortholog_one2many 1 retrogene
retro_shar_127,
Ictidomys tridecemlineatus ENSSTOG00000022111 ortholog_one2one 1 retrogene
retro_itri_870,
Vicugna pacos ENSVPAG00000001963 ortholog_one2one 1 retrogene
retro_vpac_231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1873 70.69 100.00
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Download FASTA sequences of all ENSCAFG00000017406 retrocopies