RetrogeneDB ID:

retro_mluc_138

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430195:173004..174960(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000000699
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CHM
Ensembl ID:ENSMLUG00000011286
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_138
ATGGCGGACAGTCTCCCTACAGAGTTTGATGTAATTATCATAGGGACAGGTTTGCCTGAATCCATCCTTGCGGCTGCATG
TTCAAGAAGTGGGCAGAGAGTGCTACATGTTGATTCGAGAAGTTACTATGGAGGAAACTGGGCTAGTTTCACCTTTTCGG
GATTGCTCTCCTGGTTGAAGGAGTGTGAGCAAGACAGTGAGGCTGGGGACAAAAGCACTGTTGCCTGGCAAAACCTGATC
CAGGACACAGAAGAAGCCATCGCTCTGCGTCGGAAGGATGACAGCATTCAACACGTAGAAGTGTTCTGTTACGCCAGCAA
GGACACCGGTGACAGTGCTGAAGAGATTGATGTTTTGCAGAAAAATCCTTCCTTGGTAGCATCTAGTACCCTCACCAAAC
CTCTGGATTCTGCATGCCTGTCCGAAGAAACACACTCAGACAGCACTAGCCCCGAAATGCCTGCCAAAGACACTCCACAA
CACGATGGAGAAATTTTACCAGAAGTAACCGATAGAGAGGAAACTCAGGTGAAAGAAACGGATTGTGGAGAGAAAACTTG
TATACACACAGTTTCAGATGGAGCTAAGGATGAAAATAAACCTGTCGTAGAAGACAACTCGGGTCAACCAAAGAGAAATC
GGATTACTTACTCTCAGATAGTTAAAGAAGGCAGGAGGTTTAATATCGACTTGGTCTCAAAGCTGCTGTATTCTCAAGGC
TCGCTGATCGATCTCTTGATCAAATCCAATGTTAGTCGCTACGCTGAATTTAAAAACGTCACCAGGATCCTCGCATTTCG
AGAGGGGAAAGTAGAACAGGTGCCTTGTTCCCGAGCAGATGTCTTTAACAGCAAAGAGCTCACCATGGTAGAAAAGAGGA
TGCTGATGAAGTTTCTGACATTTTGCTTAGACTATGAGCAGCATCCTGGGGAATACCAGGACTTCACACAGCGCCCCTTT
TCCGAGTACTTAAAGACTCAAAAGTTAACCCCCAACCTCCAGCACTTTATACTACACTCGATCGCAATGACAGAGCCATC
CTGCTTGACCGTCGACGGCCTTAAAGCAACAAAGCACTTCCTTCAGTGTCTTGGCCGGTACGGCAACACTCCCTTCTTAT
TCCCCTTGTACGGCCAAGGGGAAATTCCCCAGTGTTTCTGCAGGATGTGTGCTGTTTTTGGTGGAATCTATTGTCTTCGC
CACAGAGTGCAGTGCCTCGTGGTTGACAAGGAATCTGGAAGGTGTGAAGCAGTGATAGATCATTTTGGCCAGAGAATCAG
TGCGAAGTTTTTCATAGTGGAGGACAGCTACCTTTCCGAGGACACCTGCGCAGGCGTGCAGTATGGGCAGATCTCCAGGG
CCGTGCTCATCACAGACCAGTCCGTGCTCAAGGCAGATTCCGACCAGCAGATCTCCATGTTGACGGTCCCTCCGGCGGAA
CCAGGCGCGCGTGCCGTTCGGGTCGCTGAGTTATGTTCTTCAACCATGACGTGCATGAAAGACACCTACCTGGTGCATCT
GACCTGCTCATCGGCTAGCACAGCAAGAGAAGACTTAGAACCAGTGGTGCAGAAGTTATTCACCCCCTACGCGGAGACAG
AAATAGACGAGGGAGACCCTCCGAAGCCACGGCTCTTGTGGGCTCTTTATTTTAACATGAGGGATTCCTCAGGGGTCAGC
AGAAGCTCTTACCATGGCTTACCTTCCAACGTGTATGTCTGCTCTGGGCCTGACTGTGGACTAGGAAACGAGCACGCAGT
CAAGCTCGCCGAAACCCTGTTCCAGCAGATCTTCCCAGGAGAAGACTTCTGCCCCCCACCGCCCAATCCAGAAGACATTA
TCTTCGATGGGGATGACAAGCAACCAGAGGCTCCTGGGACCAATACTCTCATCGTGGCCAAACTAGAAGCCTCCGAAGGC
AGCCAAAACCTAGACAGCCCAGGACAGCATCTTCAA

ORF - retro_mluc_138 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.12 %
Parental protein coverage: 99.67 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalRSYYGGNWASFSFSGLLSWIMEYQENSDIVNESP-AWQEQILLNEEAIALSKLDKTIQHVEVFCYASQDM
RSYYGGNWASF.FSGLLSW..E....S.....S..AWQ..I...EEAIAL...D..IQHVEVFCYAS.D.
RetrocopyRSYYGGNWASFTFSGLLSWLKECEQDSEAGDKSTVAWQNLIQDTEEAIALRRKDDSIQHVEVFCYASKDT
ParentalHEGVEEAGALQKNHSPMTSANSTEAANSARLP--TEDESLSTVSGEVLTEQTPGSDL-EVNDVEVTRVKE
....EE...LQKN.S...S...T....SA.L...T...S.S.......T.Q..G..L.EV.D.E.T.VKE
RetrocopyGDSAEEIDVLQKNPSLVASSTLTKPLDSACLSEETHSDSTSPEMPAKDTPQHDGEILPEVTDREETQVKE
ParentalKGC-DKTCMLSTSEEGTSENVPVVEDIAKQPKKNRITYSQIVKEGRKFNIDLVSKLLYSRGLLIDLLIKS
..C..KTC....S.....EN.PVVED...QPK.NRITYSQIVKEGR.FNIDLVSKLLYS.G.LIDLLIKS
RetrocopyTDCGEKTCIHTVSDGAKDENKPVVEDNSGQPKRNRITYSQIVKEGRRFNIDLVSKLLYSQGSLIDLLIKS
ParentalNVSHYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEYEKHPDEYKAYEDIT
NVS.YAEFKN.TRILAFREG.VEQVPCSRADVFNSK.LTMVEKRMLMKFLTFC..YE.HP.EY.......
RetrocopyNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLDYEQHPGEYQDFTQRP
ParentalFSEYLKTQKLTPNLQHFVLHSIAMTSKTTSSTIDGLKATRKFLHCLGRYGNTPFLFPLYGQGELPQCFCR
FSEYLKTQKLTPNLQHF.LHSIAMT......T.DGLKAT..FL.CLGRYGNTPFLFPLYGQGE.PQCFCR
RetrocopyFSEYLKTQKLTPNLQHFILHSIAMT-EPSCLTVDGLKATKHFLQCLGRYGNTPFLFPLYGQGEIPQCFCR
ParentalMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFSENTCSHVQYRQISRAVLIT
MCAVFGGIYCLRH.VQCLVVDKES..C.A.ID.FGQRI..K.F.VEDSY.SE.TC..VQY.QISRAVLIT
RetrocopyMCAVFGGIYCLRHRVQCLVVDKESGRCEAVIDHFGQRISAKFFIVEDSYLSEDTCAGVQYGQISRAVLIT
ParentalDRSVLQADSDQQISILTVPAEEPGTSAVRVIELCSSTMTCMKGTYLVHLTCTSSKTAREDLEPVVQKLFI
D.SVL.ADSDQQIS.LTVP..EPG..AVRV.ELCSSTMTCMK.TYLVHLTC.S..TAREDLEPVVQKLF.
RetrocopyDQSVLKADSDQQISMLTVPPAEPGARAVRVAELCSSTMTCMKDTYLVHLTCSSASTAREDLEPVVQKLFT
ParentalPYTEMEM-ENEVEKPRLLWALYFNMRDSSDISRNSYNDLPSNVYVCSGPDCGLGNDNAVKQAETIFQQIC
PY.E.E..E....KPRLLWALYFNMRDSS..SR.SY..LPSNVYVCSGPDCGLGN..AVK.AET.FQQI.
RetrocopyPYAETEIDEGDPPKPRLLWALYFNMRDSSGVSRSSYHGLPSNVYVCSGPDCGLGNEHAVKLAETLFQQIF
ParentalPNEDFCPPPPNPEDIVLDGDSLQPGTSESSVVPEANSETPKESANLWKPEEH
P.EDFCPPPPNPEDI..DGD..QP..........A..E....S.NL..P..H
RetrocopyPGEDFCPPPPNPEDIIFDGDDKQPEAPGTNTLIVAKLEASEGSQNLDSPGQH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_138 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000101901 retrocopy
retro_amel_733,
Bos taurus ENSBTAG000000095981 retrocopy
retro_btau_227,
Canis familiaris ENSCAFG000000174061 retrocopy
retro_cfam_1873,
Equus caballus ENSECAG000000192011 retrocopy
retro_ecab_36,
Felis catus ENSFCAG000000306521 retrocopy
retro_fcat_1744,
Homo sapiens ENSG000001884191 retrocopy
retro_hsap_56,
Gorilla gorilla ENSGGOG000000229121 retrocopy
retro_ggor_488,
Loxodonta africana ENSLAFG000000005231 retrocopy
retro_lafr_441,
Myotis lucifugus ENSMLUG00000011286 1 retrocopy
retro_mluc_138 ,
Macaca mulatta ENSMMUG000000167761 retrocopy
retro_mmul_460,
Monodelphis domestica ENSMODG000000143641 retrocopy
retro_mdom_1776,
Mustela putorius furoENSMPUG000000011941 retrocopy
retro_mputfur_831,
Mus musculus ENSMUSG000000255311 retrocopy
retro_mmus_284,
Nomascus leucogenys ENSNLEG000000027621 retrocopy
retro_nleu_120,
Oryctolagus cuniculus ENSOCUG000000128191 retrocopy
retro_ocun_893,
Pongo abelii ENSPPYG000000205201 retrocopy
retro_pabe_215,
Pan troglodytes ENSPTRG000000220711 retrocopy
retro_ptro_400,
Rattus norvegicus ENSRNOG000000001611 retrocopy
retro_rnor_981,
Sarcophilus harrisii ENSSHAG000000175681 retrocopy
retro_shar_127,
Ictidomys tridecemlineatus ENSSTOG000000221111 retrocopy
retro_itri_870,
Vicugna pacos ENSVPAG000000019631 retrocopy
retro_vpac_231,


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