Parental gene:

CASC4, ENSOCUG00000005362

Aliases:None
Description:cancer susceptibility candidate 4 [Source:HGNC Symbol;Acc:24892]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:27876370..27990096(-)


>ENSOCUG00000005362
ATGGTGGGTTTCGGGGCCAACCGGCGGGCTGGCCGCCTGCCCTCCTTCGTGCTGGTGGTGCTTCTAGTGGTGATCGTTGT
CCTTGCCTTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTCCAGGAGGAGGTGGCCGAGCTGCAGGGCCAGGTCC
AGCGCACCGAGGTGGCCCGCGGGCGCCTGGAGAAGCGCAATTCGGACCTCTTGCTCTTGGTGGACACGCACAAGAAACAG
ATCGACCAGAAAGAGGCCGACTACGGTCGCCTGAGCAGCCGGCTGCAGGCCAGGGAGGGCCTGGGGAAGAGATGCGAAGA
TGACAAGGTTAAACTGCAGAACAACATATCATATCAGATGGCAGACATACATCATTTAAAGGAGCAACTTGCTGAGCTTC
GTCAGGAGTTTCTTCGACAAGAAGACCAGCTTCAGGACTATCGGAAGAATAATACTTACCTTGTGAAGAGGTTAGAATAT
GAGAGCTTTCAGTGTGGACAGCAGATCAAGGAATTAAGAGCACAACATGAAGAAAATATTAAAAAATTAGCAGACCAGTT
TTTGCAAGAACAAAAGCAAGATGCTCAGAAGTTTCAAGCAAATGATGGAGAAAAATTGAGTGTGAATGATCATGTAGTAC
CTAAAAATATTCCAGAAGTAGCTGAAAATGCTGCAGAAAAGAATGAAGATCCCTCAAGTAATCATATTTCACATGGGAAA
GAACAAATCAAACGAGGTGGTGATGCAGGGATGCCTGGAATAGAAGAGAATGACCTAGCAAAAGCTGATGATCTTCCTGC
TGCTAATTTAAATAAACCTCATATATCAGTTTCTCAACTTGGAGGTCACCAAGCAATTCCCACTCATCCAACTGGACAAC
CTCTTTCTCCCAATTTGGCTGAAGCTGCACAGACGAACCATAATGGAGACCTTGGTACTTCGAAGCAGAACCCTTCCAAC
ACTCTTCAGCGTTTAATTCCAGGCTCCAAAATGGAGAGCGAACCCAAAATTCAAGCAGATTTACTAAAGCAGGCTTCCAA
GGATAAAGTTGGTGACTTCCATAAATTGAAGCAAAGCCGATTCTTTGATGAGAATGAATCCCCTGTTGATCCGCAGCATG
GCTCTAAACTGGCGGATTATAATGGGGATGATGGTAACGTAGGTGAGTATGAGGCAGACAAGCAGGCTGAGCTGGCATAC
AATGAGGAAGAAGATGGTGATGGTGGAGAGGAAGACGTCCAAGATGATGAAGAACGAGAGCTTCAAATGGACCCTGGAGA
TTATGGAAAGCAACATTTCAATGATGTCCTCTGA

Library Parental gene expression (RPM)
SRP017611_liver 37 .30 RPM
SRP017611_kidney 56 .86 RPM
SRP017611_brain 108 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006998 ortholog_one2one 4 retrogenes
retro_chof_1422, retro_chof_1445, retro_chof_2453, retro_chof_627,
Homo sapiens ENSG00000166734 ortholog_one2one 1 retrogene
retro_hsap_1238,
Nomascus leucogenys ENSNLEG00000005533 ortholog_one2one 1 retrogene
retro_nleu_2857,
Pongo abelii ENSPPYG00000006428 ortholog_one2many 1 retrogene
retro_pabe_1083,
Pan troglodytes ENSPTRG00000007010 ortholog_one2one 1 retrogene
retro_ptro_852,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1472 66.81 51.03
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Download FASTA sequences of all ENSOCUG00000005362 retrocopies