Parental gene:

PPP1CC, ENSOCUG00000009275

Aliases:None
Description:protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:9283]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:21:7001292..7024361(-)


>ENSOCUG00000009275
ATGGCGGATATAGACAAACTCAACATCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTTCAGCTACAGGAGAATGAAATCAGAGGACTGTGCTTAAAGTCTCGAGAGATCTTTCTCAGTCAGCCTATCCTACTAG
AACTTGAAGCACCACTCAAAATATGTGGTGACATCCATGGACAATACTATGATCTGCTGCGACTCTTTGAGTACGGTGGC
TTCCCGCCAGAGAGCAACTACCTGTTCCTGGGGGACTACGTGGACAGGGGAAAGCAGTCGCTGGAGACGATCTGCCTCTT
ACTGGCCTACAAGATCAAATACCCCGAGAATTTTTTTCTTCTCAGAGGGAACCATGAATGTGCCAGCATCAATAGGATTT
ACGGATTTTATGATGAATGTAAAAGAAGATACAACATTAAACTATGGAAAACTTTCACAGACTGTTTTAACTGTTTACCG
ATAGCAGCCATCGTGGATGAGAAAATCTTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCG
GCGAATTATGCGACCAACTGATGTGCCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGACCCCGATAAAGATGTCT
TAGGCTGGGGTGAAAATGACAGAGGCGTGTCCTTCACATTTGGTGCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGAT
TTGGATCTTATATGTAGAGCCCACCAGGTGGTTGAAGATGGATATGAGTTTTTTGCAAAGAGGCAGTTGGTCACTCTGTT
TTCTGCACCCAACTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACACTAATGTGTTCCTTTC
AGATTTTGAAGCCTGCAGAGAAAAAGAAGCCGAACGCCACGAGACCTGTGACACCTCCACGGGTTCCATCAGGCCTGAAC
CCGTCCATTCAGAAAGCTTCAAATTATAGGAACAATACTGTCCTATACGAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 119 .92 RPM
SRP017611_kidney 70 .85 RPM
SRP017611_liver 48 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000004542 ortholog_many2many 1 retrogene
retro_cint_3,
Callithrix jacchus ENSCJAG00000009147 possible_ortholog 7 retrogenes
retro_cjac_1062, retro_cjac_1165, retro_cjac_1408, retro_cjac_2304, retro_cjac_2535, retro_cjac_3288, retro_cjac_822,
Echinops telfairi ENSETEG00000015721 possible_ortholog 1 retrogene
retro_etel_2065,
Pan troglodytes ENSPTRG00000005448 ortholog_one2one 1 retrogene
retro_ptro_2435,
Sorex araneus ENSSARG00000000571 possible_ortholog 1 retrogene
retro_sara_700,
Drosophila melanogaster FBgn0003134 ortholog_many2many 5 retrogenes
retro_dmel_21, retro_dmel_37, retro_dmel_42, retro_dmel_48, retro_dmel_81,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_665 61.72 60.53
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2. retro_ocun_1232 96.20 93.18
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Download FASTA sequences of all ENSOCUG00000009275 retrocopies