Parental gene: | PPP1CC, ENSOCUG00000009275 |
| Aliases: | None |
| Description: | protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:9283] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 21:7001292..7024361(-) |
>ENSOCUG00000009275
ATGGCGGATATAGACAAACTCAACATCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTTCAGCTACAGGAGAATGAAATCAGAGGACTGTGCTTAAAGTCTCGAGAGATCTTTCTCAGTCAGCCTATCCTACTAG
AACTTGAAGCACCACTCAAAATATGTGGTGACATCCATGGACAATACTATGATCTGCTGCGACTCTTTGAGTACGGTGGC
TTCCCGCCAGAGAGCAACTACCTGTTCCTGGGGGACTACGTGGACAGGGGAAAGCAGTCGCTGGAGACGATCTGCCTCTT
ACTGGCCTACAAGATCAAATACCCCGAGAATTTTTTTCTTCTCAGAGGGAACCATGAATGTGCCAGCATCAATAGGATTT
ACGGATTTTATGATGAATGTAAAAGAAGATACAACATTAAACTATGGAAAACTTTCACAGACTGTTTTAACTGTTTACCG
ATAGCAGCCATCGTGGATGAGAAAATCTTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCG
GCGAATTATGCGACCAACTGATGTGCCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGACCCCGATAAAGATGTCT
TAGGCTGGGGTGAAAATGACAGAGGCGTGTCCTTCACATTTGGTGCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGAT
TTGGATCTTATATGTAGAGCCCACCAGGTGGTTGAAGATGGATATGAGTTTTTTGCAAAGAGGCAGTTGGTCACTCTGTT
TTCTGCACCCAACTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACACTAATGTGTTCCTTTC
AGATTTTGAAGCCTGCAGAGAAAAAGAAGCCGAACGCCACGAGACCTGTGACACCTCCACGGGTTCCATCAGGCCTGAAC
CCGTCCATTCAGAAAGCTTCAAATTATAGGAACAATACTGTCCTATACGAGTGA
ATGGCGGATATAGACAAACTCAACATCGACAGCATCATCCAACGGCTGCTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTTCAGCTACAGGAGAATGAAATCAGAGGACTGTGCTTAAAGTCTCGAGAGATCTTTCTCAGTCAGCCTATCCTACTAG
AACTTGAAGCACCACTCAAAATATGTGGTGACATCCATGGACAATACTATGATCTGCTGCGACTCTTTGAGTACGGTGGC
TTCCCGCCAGAGAGCAACTACCTGTTCCTGGGGGACTACGTGGACAGGGGAAAGCAGTCGCTGGAGACGATCTGCCTCTT
ACTGGCCTACAAGATCAAATACCCCGAGAATTTTTTTCTTCTCAGAGGGAACCATGAATGTGCCAGCATCAATAGGATTT
ACGGATTTTATGATGAATGTAAAAGAAGATACAACATTAAACTATGGAAAACTTTCACAGACTGTTTTAACTGTTTACCG
ATAGCAGCCATCGTGGATGAGAAAATCTTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCG
GCGAATTATGCGACCAACTGATGTGCCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGACCCCGATAAAGATGTCT
TAGGCTGGGGTGAAAATGACAGAGGCGTGTCCTTCACATTTGGTGCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGAT
TTGGATCTTATATGTAGAGCCCACCAGGTGGTTGAAGATGGATATGAGTTTTTTGCAAAGAGGCAGTTGGTCACTCTGTT
TTCTGCACCCAACTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACACTAATGTGTTCCTTTC
AGATTTTGAAGCCTGCAGAGAAAAAGAAGCCGAACGCCACGAGACCTGTGACACCTCCACGGGTTCCATCAGGCCTGAAC
CCGTCCATTCAGAAAGCTTCAAATTATAGGAACAATACTGTCCTATACGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 48 .40 RPM |
| SRP017611_kidney | 70 .85 RPM |
| SRP017611_brain | 119 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ciona intestinalis | ENSCING00000004542 | ortholog_many2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000009147 | possible_ortholog | 7 retrogenes | |
| Echinops telfairi | ENSETEG00000015721 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005448 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000000571 | possible_ortholog | 1 retrogene | |
| Drosophila melanogaster | FBgn0003134 | ortholog_many2many | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_665 | 61.72 | 60.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1232 | 96.20 | 93.18 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000009275 retrocopies