Parental gene:

NIPA2, ENSOCUG00000010746

Aliases:None
Description:non imprinted in Prader-Willi/Angelman syndrome 2 [Source:HGNC Symbol;Acc:17044]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:77664169..77681490(-)


>ENSOCUG00000010746
ATGAGCCCAGGGCGTGGAAAATATGACTTTTATATTGGTCTGGGATTGGCTATGAGCTCCAGTATTTTCATTGGAGGGAG
TTTCATTTTGAAAAAAAAAGGACTTCTGCGACTTGCCAGAAAAGGTTCCATGAGAGCAGGTCAAGGTGGCCATGCATATC
TTAAAGAATGGTTGTGGTGGGCTGGACTGCTGTCAATGGGAGCTGGGGAGGTGGCCAACTTTGCTGCTTATGCATTTGCA
CCAGCCACGCTAGTGACTCCGCTAGGAGCTCTCAGCGTCCTCGTAAGTGCCATTCTTTCTTCATACTTTCTAAATGAAAG
ACTTAATCTTCATGGGAAAATTGGATGTTTGCTAAGTATTCTAGGATCTACAGTTATGGTCATTCATGCTCCAAAAGAGG
AGGAGATTGAGACTTTAAATGAAATGTCTCACAAACTAGGTGATCCAGGTTTTGTGGTGTTTGCAACACTTGTGGTCATT
GTGTCCTTGATATTCATCTTTGTGGTAGGACCTCGCCATGGACAGACAAACATTCTCGTGTATATAACAATCTGTTCCGT
CATTGGAGCATTTTCAGTGTCCTGTGTGAAGGGCCTGGGCATTGCTATCAAAGAGCTGTTTGCAGGAAAGCCCGTGCTGC
GGCATCCTCTGGCCTGGATCCTTCTGCTGAGCCTGGTTGTCTGTGTGAGCACACAGATTAATTACCTGAACAGGGCCCTG
GACATATTCAACACTTCCATCGTGACTCCAATATATTATGTATTCTTTACAACCTCCGTCTTAACGTGTTCAGCTATTCT
TTTTAAGGAGTGGCAAGATATGCCTGTTGATGATGTCATTGGTACTCTGAGTGGCTTCTTTACAATCATTGTGGGGATCT
TCCTTTTGCATGCCTTTAAAGATGTCAGCTTTAGTCTATCAAGTTTGCCCGTGTCTTTTCGGAAAGATGAAAAAGCAGTA
AATGGCAATCTCTCTAGTATGTATGAAGTTCTTAATAGTAATGAAGAAAGCGTAACCTGTGGAATTGAACAACACACTGG
TGAAAATATCTCCCGAAGAAATGGAAACCTGACAGCATTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 30 .96 RPM
SRP017611_kidney 48 .25 RPM
SRP017611_liver 15 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013824 ortholog_one2one 1 retrogene
retro_amel_1163,
Choloepus hoffmanni ENSCHOG00000005553 ortholog_one2many 1 retrogene
retro_chof_9,
Callithrix jacchus ENSCJAG00000005448 ortholog_one2one 1 retrogene
retro_cjac_1506,
Equus caballus ENSECAG00000006379 ortholog_one2one 1 retrogene
retro_ecab_656,
Felis catus ENSFCAG00000023073 ortholog_one2one 1 retrogene
retro_fcat_246,
Macaca mulatta ENSMMUG00000003892 ortholog_one2one 1 retrogene
retro_mmul_1510,
Mus musculus ENSMUSG00000030452 ortholog_one2one 1 retrogene
retro_mmus_3551,
Ictidomys tridecemlineatus ENSSTOG00000004003 ortholog_one2many 3 retrogenes
retro_itri_1847, retro_itri_347, retro_itri_388,
Vicugna pacos ENSVPAG00000000671 ortholog_one2one 1 retrogene
retro_vpac_285,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_773 57.30 75.00
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2. retro_ocun_809 71.94 69.17
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3. retro_ocun_1581 80.14 76.11
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Download FASTA sequences of all ENSOCUG00000010746 retrocopies