Parental gene: | NIPA2, ENSOCUG00000010746 |
| Aliases: | None |
| Description: | non imprinted in Prader-Willi/Angelman syndrome 2 [Source:HGNC Symbol;Acc:17044] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 17:77664169..77681490(-) |
>ENSOCUG00000010746
ATGAGCCCAGGGCGTGGAAAATATGACTTTTATATTGGTCTGGGATTGGCTATGAGCTCCAGTATTTTCATTGGAGGGAG
TTTCATTTTGAAAAAAAAAGGACTTCTGCGACTTGCCAGAAAAGGTTCCATGAGAGCAGGTCAAGGTGGCCATGCATATC
TTAAAGAATGGTTGTGGTGGGCTGGACTGCTGTCAATGGGAGCTGGGGAGGTGGCCAACTTTGCTGCTTATGCATTTGCA
CCAGCCACGCTAGTGACTCCGCTAGGAGCTCTCAGCGTCCTCGTAAGTGCCATTCTTTCTTCATACTTTCTAAATGAAAG
ACTTAATCTTCATGGGAAAATTGGATGTTTGCTAAGTATTCTAGGATCTACAGTTATGGTCATTCATGCTCCAAAAGAGG
AGGAGATTGAGACTTTAAATGAAATGTCTCACAAACTAGGTGATCCAGGTTTTGTGGTGTTTGCAACACTTGTGGTCATT
GTGTCCTTGATATTCATCTTTGTGGTAGGACCTCGCCATGGACAGACAAACATTCTCGTGTATATAACAATCTGTTCCGT
CATTGGAGCATTTTCAGTGTCCTGTGTGAAGGGCCTGGGCATTGCTATCAAAGAGCTGTTTGCAGGAAAGCCCGTGCTGC
GGCATCCTCTGGCCTGGATCCTTCTGCTGAGCCTGGTTGTCTGTGTGAGCACACAGATTAATTACCTGAACAGGGCCCTG
GACATATTCAACACTTCCATCGTGACTCCAATATATTATGTATTCTTTACAACCTCCGTCTTAACGTGTTCAGCTATTCT
TTTTAAGGAGTGGCAAGATATGCCTGTTGATGATGTCATTGGTACTCTGAGTGGCTTCTTTACAATCATTGTGGGGATCT
TCCTTTTGCATGCCTTTAAAGATGTCAGCTTTAGTCTATCAAGTTTGCCCGTGTCTTTTCGGAAAGATGAAAAAGCAGTA
AATGGCAATCTCTCTAGTATGTATGAAGTTCTTAATAGTAATGAAGAAAGCGTAACCTGTGGAATTGAACAACACACTGG
TGAAAATATCTCCCGAAGAAATGGAAACCTGACAGCATTTTAA
ATGAGCCCAGGGCGTGGAAAATATGACTTTTATATTGGTCTGGGATTGGCTATGAGCTCCAGTATTTTCATTGGAGGGAG
TTTCATTTTGAAAAAAAAAGGACTTCTGCGACTTGCCAGAAAAGGTTCCATGAGAGCAGGTCAAGGTGGCCATGCATATC
TTAAAGAATGGTTGTGGTGGGCTGGACTGCTGTCAATGGGAGCTGGGGAGGTGGCCAACTTTGCTGCTTATGCATTTGCA
CCAGCCACGCTAGTGACTCCGCTAGGAGCTCTCAGCGTCCTCGTAAGTGCCATTCTTTCTTCATACTTTCTAAATGAAAG
ACTTAATCTTCATGGGAAAATTGGATGTTTGCTAAGTATTCTAGGATCTACAGTTATGGTCATTCATGCTCCAAAAGAGG
AGGAGATTGAGACTTTAAATGAAATGTCTCACAAACTAGGTGATCCAGGTTTTGTGGTGTTTGCAACACTTGTGGTCATT
GTGTCCTTGATATTCATCTTTGTGGTAGGACCTCGCCATGGACAGACAAACATTCTCGTGTATATAACAATCTGTTCCGT
CATTGGAGCATTTTCAGTGTCCTGTGTGAAGGGCCTGGGCATTGCTATCAAAGAGCTGTTTGCAGGAAAGCCCGTGCTGC
GGCATCCTCTGGCCTGGATCCTTCTGCTGAGCCTGGTTGTCTGTGTGAGCACACAGATTAATTACCTGAACAGGGCCCTG
GACATATTCAACACTTCCATCGTGACTCCAATATATTATGTATTCTTTACAACCTCCGTCTTAACGTGTTCAGCTATTCT
TTTTAAGGAGTGGCAAGATATGCCTGTTGATGATGTCATTGGTACTCTGAGTGGCTTCTTTACAATCATTGTGGGGATCT
TCCTTTTGCATGCCTTTAAAGATGTCAGCTTTAGTCTATCAAGTTTGCCCGTGTCTTTTCGGAAAGATGAAAAAGCAGTA
AATGGCAATCTCTCTAGTATGTATGAAGTTCTTAATAGTAATGAAGAAAGCGTAACCTGTGGAATTGAACAACACACTGG
TGAAAATATCTCCCGAAGAAATGGAAACCTGACAGCATTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 15 .18 RPM |
| SRP017611_kidney | 48 .25 RPM |
| SRP017611_brain | 30 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013824 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000005553 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005448 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000006379 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000023073 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003892 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000030452 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000004003 | ortholog_one2many | 3 retrogenes | |
| Vicugna pacos | ENSVPAG00000000671 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_773 | 57.30 | 75.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_809 | 71.94 | 69.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1581 | 80.14 | 76.11 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000010746 retrocopies