Parental gene:

RAB5A, ENSOCUG00000012200

Aliases:None
Description:RAB5A, member RAS oncogene family [Source:HGNC Symbol;Acc:9783]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:14:6021787..6057783(+)


>ENSOCUG00000012200
ATGGCTAATCGAGGAGCAACAAGACCCAACGGGCCAAATACTGGAAATAAAATATGCCAGTTCAAACTAGTACTTCTGGG
AGAGTCTGCTGTTGGCAAATCAAGCCTAGTGCTTCGTTTTGTGAAAGGCCAATTTCATGAATTTCAAGAGAGTACCATTG
GGGCTGCTTTTCTAACCCAAACTGTGTGTCTTGATGACACAACAGTAAAGTTTGAAATCTGGGATACAGCTGGTCAAGAG
CGATACCATAGCCTAGCACCAATGTACTACAGAGGAGCACAAGCAGCCATCGTTGTCTACGACATTACAAATGAGGAATC
CTTTGCAAGAGCAAAAAACTGGGTTAAAGAGCTTCAGAGGCAAGCAAGTCCTAACATTGTAATAGCATTATCAGGAAACA
AGGCTGACCTAGCAAATAAAAGAGCAGTAGATTTCCAGGAAGCACAGTCCTATGCAGATGACAACAGTTTATTATTCATG
GAGACATCAGCTAAAACATCGATGAATGTAAATGAAATATTCATGGCAATAGCTAAAAAGTTGCCAAAGAATGAACCACA
GAATCCAGGAGGAAATTCTGCTAGAGGAAGAGGAGTAGACCTTACTGAACCTACACAACCAACCAGGAGTCAGTGTTGTA
GTAACTAA

Library Parental gene expression (RPM)
SRP017611_liver 20 .58 RPM
SRP017611_kidney 45 .51 RPM
SRP017611_brain 106 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000954 ortholog_one2one 1 retrogene
retro_amel_958,
Bos taurus ENSBTAG00000046385 ortholog_one2one 1 retrogene
retro_btau_300,
Callithrix jacchus ENSCJAG00000003731 ortholog_one2many 1 retrogene
retro_cjac_3268,
Cavia porcellus ENSCPOG00000005322 ortholog_one2one 2 retrogenes
retro_cpor_1213, retro_cpor_219,
Dipodomys ordii ENSDORG00000012429 ortholog_one2one 1 retrogene
retro_dord_288,
Felis catus ENSFCAG00000004455 ortholog_one2one 2 retrogenes
retro_fcat_1349, retro_fcat_984,
Homo sapiens ENSG00000144566 ortholog_one2one 1 retrogene
retro_hsap_1074,
Gorilla gorilla ENSGGOG00000015981 ortholog_one2one 1 retrogene
retro_ggor_848,
Loxodonta africana ENSLAFG00000008321 ortholog_one2one 1 retrogene
retro_lafr_267,
Macaca mulatta ENSMMUG00000006992 ortholog_one2many 2 retrogenes
retro_mmul_227, retro_mmul_839,
Monodelphis domestica ENSMODG00000014793 ortholog_one2one 2 retrogenes
retro_mdom_1219, retro_mdom_1993,
Mus musculus ENSMUSG00000017831 ortholog_one2one 1 retrogene
retro_mmus_1645,
Nomascus leucogenys ENSNLEG00000003434 ortholog_one2one 1 retrogene
retro_nleu_2466,
Oryctolagus cuniculus ENSOCUG00000004414 within_species_paralog 1 retrogene
retro_ocun_554,
Oryctolagus cuniculus ENSOCUG00000013895 within_species_paralog 1 retrogene
retro_ocun_1193,
Pongo abelii ENSPPYG00000014074 ortholog_one2one 2 retrogenes
retro_pabe_3094, retro_pabe_894,
Pan troglodytes ENSPTRG00000014682 ortholog_one2one 1 retrogene
retro_ptro_731,
Ictidomys tridecemlineatus ENSSTOG00000026229 ortholog_one2one 1 retrogene
retro_itri_398,
Tarsius syrichta ENSTSYG00000007642 ortholog_one2one 3 retrogenes
retro_tsyr_1544, retro_tsyr_315, retro_tsyr_946,
Tursiops truncatus ENSTTRG00000001374 ortholog_one2one 1 retrogene
retro_ttru_949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1034 77.92 71.63
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSOCUG00000012200 retrocopies