RetrogeneDB ID: | retro_mmul_227 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:95013553..95014201(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000032398 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB5A | ||
Ensembl ID: | ENSMMUG00000006992 | ||
Aliases: | None | ||
Description: | ras-related protein Rab-5A [Source:RefSeq peptide;Acc:NP_001248077] |
Percent Identity: | 95.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MANRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK |
MANRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK | |
Retrocopy | MANRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK |
Parental | FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK |
FEI.DTAGQERYHSLAPMYYRGAQA.IVVYDITNEESFARAKNWVKELQRQASPN.VIAL.GNKA.LANK | |
Retrocopy | FEIRDTAGQERYHSLAPMYYRGAQAVIVVYDITNEESFARAKNWVKELQRQASPNTVIALAGNKANLANK |
Parental | RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRS |
RAV.FQEAQS.ADDNSLLFMETSAKTSM.VNEIFMAIAKKLPK.EPQNPGANSARGRGVDLTEPT.PTRS | |
Retrocopy | RAVNFQEAQSFADDNSLLFMETSAKTSMDVNEIFMAIAKKLPKDEPQNPGANSARGRGVDLTEPTRPTRS |
Parental | QCCSN |
QCCSN | |
Retrocopy | QCCSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 61 .63 RPM |
SRP007412_brain_prefrontal_cortex | 0 .48 RPM | 31 .65 RPM |
SRP007412_cerebellum | 0 .00 RPM | 45 .65 RPM |
SRP007412_heart | 0 .12 RPM | 21 .14 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .64 RPM |
SRP007412_liver | 0 .00 RPM | 11 .36 RPM |
SRP007412_testis | 0 .04 RPM | 22 .65 RPM |