Parental gene:

TCP1, ENSOCUG00000013847

Aliases:None
Description:t-complex 1 (TCP1), mRNA [Source:RefSeq mRNA;Acc:NM_001163114]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:12:149628993..149636248(-)


>ENSOCUG00000013847
ATGGAGGGGCCCTTGTCTGTGTTCGGGGACCGCAGCACCGGGGAGGCGATCCGCTCCCAGAACGNNNTGGCTGCGGCTTC
GATTGCTAACATTGTGAAAAGCTCGCTTGGTCCGGTGGGCTTGGACAAGATGCTGGTGGACGACATCGGTGACGTGACCA
TCACTAACGACGGGGCCACCATCCTGAAGCTGCTGGAGGTGGAGCATCCCGCAGCCAAGGTGCTTTGTGAGCTGGCCGAC
CTGCAGGATAAGGAAGTCGGAGACGGGACCACCTCCGTGGTCATCATCGCAGCAGAACTGCTGAAGAACGCGGACGAGCT
GGTCAAGCAGAAAATCCACCCCACCTCAGTCATCAGTGGCTACCGGCTTGCCTGCAAGGAAGCGGTGCGCTATATCAGTG
AAAACCTGATTATCAACACGGATGAACTCGGGAGAGATTGCCTGATTAACGCTGCGAAGACGTCAATGTCTTCCAAAATC
ATCGGGATAAACGGAGATTTCTTCTCTAATATGGTGGTAGATGCCGTGCTTGCTGTTAAATATACAGACGTACGAGGCCA
GCCTCGCTACCCAGTCAACTCCATCAATATTCTGAAAGCCCACGGGAGAAGCCAGACCGAGAGCATGCTCGTCAGTGGCT
ACGCTCTCAACTGTGTGGTGGGATCTCAGGGCATGCCCAAGAGAATAGTTAATGCAAAAATTGCTTGCCTAGACTTCAGC
CTGCAGAAAACAAAAATGAAGCTCGGTGTACAAGTGGTCATTACAGACCCTGAAAAATTGGACCAAATTAGGCAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCTTGGCGACTGGTGCCAATGTCATCCTCACCACCGGCGGCATTGATG
ACATGTGTCTCAAGTATTTTGTGGACGCTGGTGCAATGGCAGTTAGGAGAGTTTTAAAGAGGGATCTTAAGCGGATTGCT
AAAGCTTCTGGAGCAAGTATTCTGTCAACCCTGGCCAACTTGGAAGGTGAAGAGACTTTTGAAGCTGTGATGTTGGGACA
AGCGGAGGAGGTGGTACAGGAGAGAATCTGTGATGACGAGCTGATCTTAATCAAAAACACTAAGGCGCGTACGTCTGCGT
CCATCATCCTGCGCGGTGCCAACGACTTCATGTGTGACGAGATGGAGCGCTCCCTGCATGATGCTCTCTGTGTGGTGAAG
AGAGTTCTGGAGTCAAAGTCTGTGGTTCCAGGTGGGGGCGCTGTCGAGGCAGCGCTGTCCATATACCTTGAGAACTACGC
CACCAGCATGGGCTCGCGGGAGCAGCTGGCTATTGCCGAGTTCGCACGGTCGCTCCTCGTGATCCCTAACACGCTGGCCG
TGAACGCTGCCCAGGACTCCACGGATCTGGTCGCAAAGTTGAGAGCTTTTCACAATGAGGCGCAGGTGAACCCAGAACGG
AAAAATCTAAAATGGATTGGCCTTGATCTGATCAATGGCAAGCCTCGAGACAACAAGCAGGCAGGGGTGTTTGAGCCAAC
CATAGTGAAAGTAAAGAGTCTGAAGTTTGCCACAGAAGCTGCAATCACCATTCTCCGCATTGATGACCTCATCAAGTTAC
ATCCAGAAACTAAAGATGACAAGCATGGAGGCTACGAAGATGCTGTTCATTCTGGAGCCCTTGATGACTGA

Library Parental gene expression (RPM)
SRP017611_liver 93 .41 RPM
SRP017611_kidney 178 .39 RPM
SRP017611_brain 182 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015405 ortholog_one2one 1 retrogene
retro_amel_828,
Callithrix jacchus ENSCJAG00000011792 ortholog_one2one 2 retrogenes
retro_cjac_1867, retro_cjac_2193,
Equus caballus ENSECAG00000017953 ortholog_one2one 1 retrogene
retro_ecab_798,
Homo sapiens ENSG00000120438 ortholog_one2one 1 retrogene
retro_hsap_3722,
Gorilla gorilla ENSGGOG00000014063 ortholog_one2one 1 retrogene
retro_ggor_2514,
Microcebus murinus ENSMICG00000007998 ortholog_one2one 1 retrogene
retro_mmur_795,
Macaca mulatta ENSMMUG00000012846 ortholog_one2many 1 retrogene
retro_mmul_1696,
Pongo abelii ENSPPYG00000017146 ortholog_one2one 1 retrogene
retro_pabe_3135,
Pan troglodytes ENSPTRG00000018760 ortholog_one2one 1 retrogene
retro_ptro_2617,
Pteropus vampyrus ENSPVAG00000005316 ortholog_one2one 1 retrogene
retro_pvam_522,
Rattus norvegicus ENSRNOG00000014160 ortholog_one2one 1 retrogene
retro_rnor_2091,
Sorex araneus ENSSARG00000002463 ortholog_one2one 1 retrogene
retro_sara_624,
Sarcophilus harrisii ENSSHAG00000015128 ortholog_one2many 1 retrogene
retro_shar_830,
Ictidomys tridecemlineatus ENSSTOG00000005572 ortholog_one2one 1 retrogene
retro_itri_1274,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1577 91.63 89.93
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Download FASTA sequences of all ENSOCUG00000013847 retrocopies