Parental gene:

ENSOCUG00000017030

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:16:50337975..50395414(+)


>ENSOCUG00000017030
ATGTCGGAGGTGACCCGGAGTCTGCTGCAGCGCTGGGGCGCCAGTTTTAGGAGAGGCGCCGACTTCGACTCTTGGGGCCA
GCTGGTGGAGGCGATAGACGAGTATCAGATATTGGCAAGACATCTACAAAAAGAAGCCCAAGCTCAACACAATAATTCTG
AATTTACCGAAGAACAAAAGAAAACCATAGGCAAAATTGCAACATGCTTGGAATTGCGAAGTGCAGCTTTACAGTCCACA
CAGTCCCAAGAAGAATTTAAACTGGAGGACCTGAAGAAGCTAGAACCAATCCTAAAGAATATTCTTACATATAATAAAGA
ATTCCCATTTGATGTTCAGCCTGTCCCATTAAGAAGAATTTTAGCACCTGGTGAAGAAGAGAATTTGGAATTCGAAGAAG
ATGAAGAAGAGGGTGGTGCTGGAGCAGGATCTCCTGATTCTTTTCCTGCCAGAGTTCCTGGTACCTTATTACCAAGGTTG
CCCTCAGAACCAGGAATGACATTACTCACAATCAGAATTGAGAAGATTGGTCTGAAAGATGCTGGGCAGTGCATCGACCC
CTATATTACAGTTAGTGTAAAAGATCTGAATGGCATAGATTTAACTCCTGTGCAGGATACTCCCGTGGCTTCACGAAAAG
AAGATACGTATGTTCACTTTAATGTGGACATCGAGCTCCAGAAGCATGTTGAAAAATTAACCAAAGGTGCAGCTATCTTC
TTTGAATTCAAACACTACAAGCCTAAAAAAAGGTTTACCAGCACCAAATGTTTTGCTTTCATGGAGATGGATGAAATTAA
GCCTGGGCCAATTGTAATAGAGCTATACAAGAAACCCACTGACTTTAAAAGAAAGAAATTGCAATTATTGACCAAGAAAC
CACTTTATCTTCATCTACATCAAACTTTGCACAAGGAATGA

Library Parental gene expression (RPM)
SRP017611_brain 31 .07 RPM
SRP017611_kidney 26 .86 RPM
SRP017611_liver 13 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007593 ortholog_one2many 2 retrogenes
retro_btau_1163, retro_btau_573,
Choloepus hoffmanni ENSCHOG00000010095 ortholog_one2many 2 retrogenes
retro_chof_1919, retro_chof_97,
Dasypus novemcinctus ENSDNOG00000008380 ortholog_one2many 5 retrogenes
retro_dnov_1765, retro_dnov_1909, retro_dnov_1961, retro_dnov_2172, retro_dnov_2280,
Homo sapiens ENSG00000186063 ortholog_one2many 4 retrogenes
retro_hsap_1901, retro_hsap_2076, retro_hsap_2998, retro_hsap_410,
Gorilla gorilla ENSGGOG00000015289 ortholog_one2many 3 retrogenes
retro_ggor_1394, retro_ggor_1627, retro_ggor_2077,
Macaca mulatta ENSMMUG00000015025 ortholog_one2many 1 retrogene
retro_mmul_1918,
Monodelphis domestica ENSMODG00000004774 ortholog_one2many 3 retrogenes
retro_mdom_1417, retro_mdom_1418, retro_mdom_1448,
Mus musculus ENSMUSG00000042901 possible_ortholog 3 retrogenes
retro_mmus_1939, retro_mmus_3098, retro_mmus_763,
Nomascus leucogenys ENSNLEG00000013583 ortholog_one2many 1 retrogene
retro_nleu_748,
Pongo abelii ENSPPYG00000000196 ortholog_one2many 2 retrogenes
retro_pabe_2015, retro_pabe_2485,
Pan troglodytes ENSPTRG00000002010 ortholog_one2many 3 retrogenes
retro_ptro_1254, retro_ptro_1528, retro_ptro_2027,
Pteropus vampyrus ENSPVAG00000010662 possible_ortholog 1 retrogene
retro_pvam_940,
Tarsius syrichta ENSTSYG00000005745 ortholog_one2many 3 retrogenes
retro_tsyr_101, retro_tsyr_1795, retro_tsyr_514,
Tursiops truncatus ENSTTRG00000016594 ortholog_one2many 1 retrogene
retro_ttru_1084,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_688 66.67 55.88
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Download FASTA sequences of all ENSOCUG00000017030 retrocopies