Parental gene:

SDAD1, ENSOCUG00000026953

Aliases:None
Description:SDA1 domain containing 1 [Source:HGNC Symbol;Acc:25537]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:15:74422871..74451310(+)


>ENSOCUG00000026953
ATGTCCAGCAGAAACAACAACAAGCTGCCCAGCAACCTCCCGCAGTTACAGAATCTTATCAAGCGGGACCCGCCGGCCTA
CATCGAGGAGTTTCTACAGCAGTATAATCACTACAGATCCAATGTGGAGATTTTCAAATTACAACCAAATAAACCCAGCA
AAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTGGCCACTGCTACCCGGAGCATCTCTGCAACTTTCCTCAAGAG
CTGAAAGATCTTCTCTCCTACAATCATACTGTCTTGGACCCAGATCTCCGAATGACATTTTGCAAAGCTTTGATCCTGCT
GAGAAATAAGAATCTCATTGATCCATCAGGCTTACTAGAGCTCTTCTTTGAACTTCTGCGTTGCCACGACAAGCTGCTAC
GAAAGACTTTATATACACATATTGTGACTGACATCAAGAATATAAATGCAAAACACAAGAACAATAAAGTGAATATAGTC
TTGCAGAATTTCATGTACACCATGTTAAGAGACAGCAATGCGACAGCAGCCAAGATATCTTTGGATGTGATGATCGAGCT
CTATAGAAGGAACATCTGGAATGATGCCAAAACCGTCAATGTTATCACGACTGCGTGTTTCTCTAAGGTCACCAAGATAC
TGGTTGCTGCTTTGACATTCTTCCTCGGAAAAGATGAAGATGAGAAGCAGGACAGCGACTCAGAATCTGAGGATGAAGGG
CCAACAGCCAGAGACCTGCTAGTGCAGTACGCCACCGGGAAGAAGAGCTCCAAGAACAAGAAAAGGTTGGAAAAGGCGAT
GAAAGTGCTCAGGAAACAAAAGAAGAAGAAAAAACCAGAGGTGTTTAACTTCTCAGCTATTCACTTGATTCATGATCCCC
AAGACTTTGCGGAAAAACTACTAAAGCAGCTGGAGAGCTCCAAGGAGAGGTTTGAAGTGAAGATGATGCTCATGAACCTC
ATCTCCAGACTGGTGGGAATTCACGAGCTTTTCCTCTTCAACTTCTATCCCTTTGTGCAAAGGTTCCTACAGCCCCACCA
GAGAGAAGTAACGAAGATCCTTCTGTTTGCTGCACAGGCTTCTCATCACCTGGTGCCCCCAGAGATCATTCAGTCGTTGC
TCATGACGGTGGCCAACAACTTTGTTACCGACAAGAACTCCGGGGAAGTCATGACTGTAGGCATCAATGCTATCAAAGAG
ATAACAGCTCGGTGTCCTCTAGCCATGACTGAAGAACTTCTCCAAGACTTGGCTCAGTATAAAACGCACAAAGATAAGAA
TGTGATGATGGCTGCTAGAACTTTGATTCAGCTCTTCCGCACCCTGAACCCGCAGATGTTGCAGAAGAAGTTCCGGGGTA
AGCCTACAGAGGCCTCCACAGAGGCGCGAGTCCAAGAATATGGAGAATTAGATGCTAAAGATTATATTCCAGGAGCAGAA
GTCTTGGAAGTTGAGAAAGAAGAGAATGCTGAAAATGACGAAGATGGGTGGGAAAGCACCAGTCTCAGTGAGGAAGATGA
GGAGGATGCTGACGGGGAATGGGTTGATGTGCACCACTCTTCCGACGAAGAGCAGCAAGAAATCTCCCGGAAGCTGAACA
GCATGCCCATGGAGGAGCGCAAAGCCAAAGCTGCCGCCGTCAGCACCAGTCGGGTTTTAACTCAGGAAGACTTCCAGAAG
ATCCGCATTGCCCAGATGAGGAAAGAGCTCGACGCTGCCCCTGGGAAAGCCGAGAAGAGGAAGTATATTGAGATAGACAG
TGACGAGGAACGCAGGGGCGAGTTACTGTCCCTCCGGGATATTGAACGCCTTCATAAAAAGCCAAAGTCTGACAAGGAGA
CAAGGCTGGCAACTGCAATGGCTGGGAAAACAGACCGAAAGGAATTTGTGCGAAAGAAAACCAAAATGAACCCATTCGCT
AGTTCCACAAATAAAGAGAAGAAAAAGCAGAAGAACTTCATGATGATGCGGTATAGCCAGAACGTCCGGTCCAAAAACAA
GCGTTCCTTCCGCGAGAAGCAGCTGGCACTACGAGATGCACTTTTGAAAAAGAGAAAAAGAATGAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 12 .75 RPM
SRP017611_kidney 12 .26 RPM
SRP017611_liver 7 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000008524 ortholog_one2one 2 retrogenes
retro_cpor_510, retro_cpor_994,
Homo sapiens ENSG00000198301 ortholog_one2one 2 retrogenes
retro_hsap_2412, retro_hsap_4030,
Gorilla gorilla ENSGGOG00000006441 ortholog_one2many 1 retrogene
retro_ggor_1498,
Loxodonta africana ENSLAFG00000012217 possible_ortholog 1 retrogene
retro_lafr_980,
Macaca mulatta ENSMMUG00000017503 ortholog_one2many 1 retrogene
retro_mmul_604,
Nomascus leucogenys ENSNLEG00000027034 ortholog_one2many 1 retrogene
retro_nleu_2410,
Pongo abelii ENSPPYG00000014852 ortholog_one2one 1 retrogene
retro_pabe_1777,
Pan troglodytes ENSPTRG00000024399 ortholog_one2one 2 retrogenes
retro_ptro_1388, retro_ptro_2732,
Rattus norvegicus ENSRNOG00000022229 ortholog_one2one 2 retrogenes
retro_rnor_1381, retro_rnor_1967,
Tupaia belangeri ENSTBEG00000005270 ortholog_one2one 1 retrogene
retro_tbel_2414,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_547 87.22 51.52
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Download FASTA sequences of all ENSOCUG00000026953 retrocopies