RetrogeneDB ID: | retro_cpor_510 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_176:46760..48199(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDAD1 | ||
Ensembl ID: | ENSCPOG00000008524 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73. % |
Parental protein coverage: | 71.41 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 7 |
Parental | NDAKTVNVITTACFSKVTKILVAALTFFLGKDEDEKKDSDSESEEEGPTARDLLVQYAT-GKKSAKNKKK |
NDAK.VNV...A.FSKVTKIL.AAL..FLGKD.DEKKDS.SESEEEGPTARDLLVQYAT.G....KNK.. | |
Retrocopy | NDAKMVNVTMIASFSKVTKILAAALMLFLGKDKDEKKDSTSESEEEGPTARDLLVQYAT>GGRAPKNK-- |
Parental | LEKAMKVLKKQKKKKKPEVFNFSAIHLIHDPQDFAEKLLRQLENSKERFEVKMMLMNLISRLVGIHELF- |
LEKAMKVLKKQKKKK.PEV..FSAIHLIHDPQ..AEK.L.Q..N..ER.EVKMMLMNLISRLVGIHELF. | |
Retrocopy | LEKAMKVLKKQKKKK-PEVLDFSAIHLIHDPQGLAEK*LKQQKNYNERSEVKMMLMNLISRLVGIHELF> |
Parental | LFNFYPFLQRFLQPH-QREVTKILLFAAQASHHLVPPEIIQSLLMTVANNFVTDKNSGEVMTVGINAIKE |
LFNFYPF.QRFL.PH.QRE.TKILLFAAQASHHLVPPEIIQS.L...A.N....KNSGEVM..GI..IKE | |
Retrocopy | LFNFYPFFQRFLHPH<QREITKILLFAAQASHHLVPPEIIQS-LLMTAAN----KNSGEVMSAGIRIIKE |
Parental | ITARCPLAMTEELL-QDLAQYKTHKDKNVMMSARTLIQLFRTLNPQMLQKKFRGKPTEASVEARVQEY-G |
ITA.CPLAMT.EL..QDLAQYK.H..KNVMMS.RTLIQLF..LNPQ.LQKKF.GKP..ASVEARVQE..G | |
Retrocopy | ITAWCPLAMTVELF<QDLAQYKKHRGKNVMMSTRTLIQLFLMLNPQTLQKKFWGKPMQASVEARVQEL<G |
Parental | ELDAKDYIPGAE-VLEIEKEEDAENDEGDGWESTSLSEEEEADGEWVDVHHSSDEEQQQEISQKLSSMDT |
ELDAKDYI.GAE.VLE.EKEEDA.NDE.DGWESTSL.EEEEA.GEW...HHSSD.E.Q...SQKLSSM.T | |
Retrocopy | ELDAKDYILGAE<VLETEKEEDADNDE-DGWESTSLREEEEAGGEWFKGHHSSDKEKQ--MSQKLSSMTT |
Parental | EERKAKAAAVSTSRVLTQEDFQKIRMAQMRKELAAAPGKAQKRKYIEI-DSDEEPRGELLSLRDIERLHK |
EE....AAA.STS.V...ED..KI.M..MRK.LA.APGKAQKRKYIEI..S..EP.G.LLS..D.E.LHK | |
Retrocopy | EEC-TEAAAISTSGVW-KEDLWKIHMIHMRKALATAPGKAQKRKYIEI>NSAKEPKGKLLSF*DTECLHK |
Parental | KPKSDK-ETRLATAMAGKTDRKEFVRKKTKMNPFSSSTNKEKKKQKNFMMMRYSQNVRSKTKRSFREKQL |
.P.S...ET.L.TAMAGK.DRKE..RK.TK.N.FSS...K..KKQKN.MMM...QNV.SK.K.SF.EKQ. | |
Retrocopy | EPNSETMET*LSTAMAGKIDRKELMRKNTKVNSFSSP*MKRRKKQKNIMMMQ*CQNVWSKIKQSFQEKQG |
Parental | ALRDALLKKR |
.L.DALLK.R | |
Retrocopy | TLPDALLKER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 20 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .53 RPM |
SRP017611_liver | 0 .00 RPM | 13 .23 RPM |
SRP040447_lung | 0 .03 RPM | 25 .98 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 9 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000008524 | 2 retrocopies |
retro_cpor_510 , retro_cpor_994,
|
Homo sapiens | ENSG00000198301 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000006441 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012217 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017503 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027034 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026953 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014852 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000024399 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000022229 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005270 | 1 retrocopy |