Parental gene:

HMGN2, ENSPPYG00000001682

Aliases:None
Description:non-histone chromosomal protein HMG-17 [Source:RefSeq peptide;Acc:NP_001125775]
Organism:Orangutan (Pongo abelii)
Coordinates:1:203895907..203898452(-)


>ENSPPYG00000001682
ATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAGGGAGATAAAGCCAAGGTGAAAGACGAACCACAGAGAAGATCCGCGAG
GTTGTCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCA
AAGGGAAAAAGGGAAAAGCTGATGCTGGCAAGGAGGGGAATAACCCTGCAGAAAATGGAGATGCCAAAACAGACCAGGCA
CAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .49 RPM
SRP007412_cerebellum 12 .52 RPM
SRP007412_heart 12 .19 RPM
SRP007412_kidney 20 .78 RPM
SRP007412_liver 23 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000001787 possible_ortholog 3 retrogenes
retro_dord_10, retro_dord_401, retro_dord_511,
Felis catus ENSFCAG00000012812 possible_ortholog 3 retrogenes
retro_fcat_1842, retro_fcat_4, retro_fcat_530,
Gorilla gorilla ENSGGOG00000000971 possible_ortholog 11 retrogenes
retro_ggor_114, retro_ggor_146, retro_ggor_162, retro_ggor_166, retro_ggor_182, retro_ggor_186, retro_ggor_197, retro_ggor_23, retro_ggor_38, retro_ggor_40, retro_ggor_54,
Macropus eugenii ENSMEUG00000010966 possible_ortholog 8 retrogenes
retro_meug_1178, retro_meug_126, retro_meug_1859, retro_meug_1910, retro_meug_1997, retro_meug_248, retro_meug_369, retro_meug_76,
Mus musculus ENSMUSG00000003038 possible_ortholog 2 retrogenes
retro_mmus_202, retro_mmus_2582,
Otolemur garnettii ENSOGAG00000032571 possible_ortholog 14 retrogenes
retro_ogar_1438, retro_ogar_1445, retro_ogar_1603, retro_ogar_1668, retro_ogar_1687, retro_ogar_1998, retro_ogar_2097, retro_ogar_2210, retro_ogar_2231, retro_ogar_2424, retro_ogar_287, retro_ogar_2989, retro_ogar_3411, retro_ogar_52,
Tarsius syrichta ENSTSYG00000011519 possible_ortholog 42 retrogenes
retro_tsyr_114, retro_tsyr_1156, retro_tsyr_1165, retro_tsyr_1199, retro_tsyr_1227, retro_tsyr_1255, retro_tsyr_1270, retro_tsyr_13, retro_tsyr_1357, retro_tsyr_138, retro_tsyr_1382, retro_tsyr_1394, retro_tsyr_143, retro_tsyr_1487, retro_tsyr_1488, retro_tsyr_1506, retro_tsyr_1510, retro_tsyr_1551, retro_tsyr_1618, retro_tsyr_163, retro_tsyr_168, retro_tsyr_1680, retro_tsyr_1878, retro_tsyr_1881, retro_tsyr_1970, retro_tsyr_2019, retro_tsyr_2134, retro_tsyr_256, retro_tsyr_280, retro_tsyr_325, retro_tsyr_333, retro_tsyr_594, retro_tsyr_611, retro_tsyr_668, retro_tsyr_675, retro_tsyr_726, retro_tsyr_772, retro_tsyr_83, retro_tsyr_857, retro_tsyr_927, retro_tsyr_959, retro_tsyr_97,
Tursiops truncatus ENSTTRG00000005681 possible_ortholog 5 retrogenes
retro_ttru_1392, retro_ttru_1443, retro_ttru_3, retro_ttru_345, retro_ttru_788,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3 96.67 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_pabe_23 81.25 88.89
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_pabe_206 86.67 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_pabe_366 86.52 97.78
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_pabe_396 76.40 96.67
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_pabe_533 85.56 98.89
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_pabe_535 70.00 75.56
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_pabe_589 91.23 63.33
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_pabe_696 83.54 87.78
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_pabe_1182 87.32 78.89
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_pabe_1511 61.64 77.78
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_pabe_1977 87.91 100.00
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_pabe_1989 80.00 88.89
Please wait, loading
Please wait, loading
Please wait, loading
14. retro_pabe_2263 73.68 83.33
Please wait, loading
Please wait, loading
Please wait, loading
15. retro_pabe_2601 85.96 62.22
Please wait, loading
Please wait, loading
Please wait, loading
16. retro_pabe_3480 85.71 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000001682 retrocopies