Parental gene: | EIF4A1, ENSPPYG00000007926 |
| Aliases: | None |
| Description: | eukaryotic initiation factor 4A-I [Source:RefSeq peptide;Acc:NP_001126779] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 17:7585276..7590947(+) |
>ENSPPYG00000007926
ATGTCTGCGAGCCAGGATTCCCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGCGTTATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCCTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGATGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAATTAGATCTAAAAGCCACCCAGGCCTTGGTCCTAGC
ACCCACTCGAGAATTGGCTCAGCAGATACAGAAGGTGGTCATGGCACTAGGAGACTACATGGGCGCCTCCTGTCATGCCT
GTATCGGGGGCACCAACGTGCGTGCTGAGGTGCAGAAACTGCAGATGGAAGCTCCCCACATCATCGTGGGTACCCCTGGC
CGTGTGTTTGATATGCTTAACCGGAGATACCTGTCTCCCAAATACATCAAGATGTTTGTATTGGATGAAGCTGACGAAAT
GCTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGCTGTCAG
CCACGATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAGGAAGAG
TTGACCCTGGAGGGTATCCGCCAATTCTACATCAACGTGGAACGAGAGGAGTGGAAGCTGGACACACTATGTGACTTGTA
TGAAACCCTGACCATCACCCAGGCAGTCATCTTCATCAACACCCGGAGGAAGGTGGACTGGCTCACCGAGAAGATGCATG
CTCGAGATTTCACTGTATCTGCCATGCATGGAGATATGGACCAAAAGGAACGAGACGTGATCATGAGGGAGTTTCGTTCT
GGCTCTAGCAGAGTTTTGATTACCACTGACCTGCTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGAGGTGGACGGTTTGGCCGTAAAGGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAGAGGACTCTTCGAGACATTGAGACCTTCTACAACACCTCCATTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATCTGA
ATGTCTGCGAGCCAGGATTCCCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGCGTTATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCCTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGATGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAATTAGATCTAAAAGCCACCCAGGCCTTGGTCCTAGC
ACCCACTCGAGAATTGGCTCAGCAGATACAGAAGGTGGTCATGGCACTAGGAGACTACATGGGCGCCTCCTGTCATGCCT
GTATCGGGGGCACCAACGTGCGTGCTGAGGTGCAGAAACTGCAGATGGAAGCTCCCCACATCATCGTGGGTACCCCTGGC
CGTGTGTTTGATATGCTTAACCGGAGATACCTGTCTCCCAAATACATCAAGATGTTTGTATTGGATGAAGCTGACGAAAT
GCTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGCTGTCAG
CCACGATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAGGAAGAG
TTGACCCTGGAGGGTATCCGCCAATTCTACATCAACGTGGAACGAGAGGAGTGGAAGCTGGACACACTATGTGACTTGTA
TGAAACCCTGACCATCACCCAGGCAGTCATCTTCATCAACACCCGGAGGAAGGTGGACTGGCTCACCGAGAAGATGCATG
CTCGAGATTTCACTGTATCTGCCATGCATGGAGATATGGACCAAAAGGAACGAGACGTGATCATGAGGGAGTTTCGTTCT
GGCTCTAGCAGAGTTTTGATTACCACTGACCTGCTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGAGGTGGACGGTTTGGCCGTAAAGGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAGAGGACTCTTCGAGACATTGAGACCTTCTACAACACCTCCATTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 64 .30 RPM |
| SRP007412_cerebellum | 43 .53 RPM |
| SRP007412_heart | 66 .17 RPM |
| SRP007412_kidney | 95 .73 RPM |
| SRP007412_liver | 142 .08 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000000132 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000001107 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010780 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000007090 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010375 | ortholog_one2one | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000014384 | within_species_paralog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_548 | 84.81 | 68.97 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_846 | 93.27 | 83.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_987 | 90.44 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1090 | 87.55 | 63.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1474 | 85.17 | 51.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_3759 | 74.91 | 68.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_3792 | 95.13 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000007926 retrocopies