RetrogeneDB ID: | retro_pabe_987 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:28047955..28049171(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A1 | ||
Ensembl ID: | ENSPPYG00000007926 | ||
Aliases: | None | ||
Description: | eukaryotic initiation factor 4A-I [Source:RefSeq peptide;Acc:NP_001126779] |
Percent Identity: | 90.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY |
MSASQDS.SRDNGPDGMEP.GVIESNWNEIVDSFDDMNL.ESLLRGIYAYGFEKPSAIQQRAILPCIKGY | |
Retrocopy | MSASQDSQSRDNGPDGMEPKGVIESNWNEIVDSFDDMNLLESLLRGIYAYGFEKPSAIQQRAILPCIKGY |
Parental | DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV |
.VI.QAQSGTGK.ATF.ISIL.QIELD.KATQALVLAPT.E.AQQIQKV..ALGDYMGASCH.CIGGTNV | |
Retrocopy | VVIVQAQSGTGKMATFSISILHQIELDVKATQALVLAPT*ESAQQIQKVLIALGDYMGASCHTCIGGTNV |
Parental | RAEVQKLQMEAPHIIVGTP-GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI-YDIFQKLNSNTQ |
RAEVQKLQMEAPHIIVGTP.G.VFDMLNRRYLSPKYIKMFVLD.ADEM.S.GFKDQI..DIFQKLN.NTQ | |
Retrocopy | RAEVQKLQMEAPHIIVGTP<GHVFDMLNRRYLSPKYIKMFVLDKADEMVSHGFKDQI<LDIFQKLNRNTQ |
Parental | VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIF |
VVL.SATMPSDVLEVTKKFMRD.I.ILVKKEELTLEGI.QFYIN.EREEWKLDTL.DLYETLTITQAVIF | |
Retrocopy | VVLPSATMPSDVLEVTKKFMRDHIWILVKKEELTLEGICQFYINMEREEWKLDTLRDLYETLTITQAVIF |
Parental | INTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD |
.NTRRKVDWLTEKMHARDFTVSAMHGDMDQKERD.IMREF.SGSSRVLI.TDLLARGIDVQQ.SLVINYD | |
Retrocopy | LNTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDMIMREFHSGSSRVLIITDLLARGIDVQQGSLVINYD |
Parental | LPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI |
LPTNRENYIHRIGRGG.FG.KGVAINM.TEEDKRTL.DIETFYNT.IEEMPLN.ADLI | |
Retrocopy | LPTNRENYIHRIGRGGQFGHKGVAINMGTEEDKRTL*DIETFYNTFIEEMPLNIADLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 64 .30 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .53 RPM |
SRP007412_heart | 0 .00 RPM | 66 .17 RPM |
SRP007412_kidney | 0 .07 RPM | 95 .73 RPM |
SRP007412_liver | 0 .03 RPM | 142 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1182 |
Pan troglodytes | retro_ptro_810 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000132 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001107 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010780 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007090 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010375 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000007926 | 7 retrocopies |
retro_pabe_1090, retro_pabe_1474, retro_pabe_3759, retro_pabe_3792, retro_pabe_548, retro_pabe_846, retro_pabe_987 ,
|
Pongo abelii | ENSPPYG00000014384 | 2 retrocopies |