Parental gene:

EIF4A1, ENSBTAG00000000132

Aliases:None
Description:Eukaryotic initiation factor 4A-I [Source:UniProtKB/Swiss-Prot;Acc:Q3SZ54]
Organism:Cow (Bos taurus)
Coordinates:19:27915412..27921421(+)


>ENSBTAG00000000132
ATGTCTGCGAGTCAGGATTCCCGATCTAGAGACAATGGCCCCGATGGGATGGAACCCGAAGGCGTCATCGAGAGTAACTG
GAATGAGATTGTCGACAGCTTTGATGACATGAACCTCTCAGAGTCACTCCTCCGTGGCATATATGCCTATGGTTTTGAGA
AGCCCTCTGCCATTCAGCAGCGAGCCATTCTTCCTTGTATCAAGGGTTATGATGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACTTTTGCCATATCAATTCTGCAACAGATTGAATTAGATCTAAAGGCCACCCAGGCCTTGGTCCTGGC
ACCCACTAGAGAGTTGGCCCAGCAGATACAGAAGGTAGTAATGGCCTTAGGAGATTACATGGGTGCCTCGTGCCATGCCT
GCATTGGGGGTACCAATGTACGTGCTGAGGTGCAGAAGCTGCAGATGGAAGCCCCCCATATCATCGTGGGTACCCCAGGC
CGTGTGTTCGACATGCTTAACCGGAGATACTTGTCTCCCAAATACATCAAGATGTTTGTACTGGATGAAGCTGATGAAAT
GTTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAGAAGCTCAACAGCAACACCCAGGTGGTTTTGCTGTCAG
CTACAATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCAATTAGAATTCTTGTCAAGAAGGAAGAG
TTGACGCTGGAGGGTATCCGTCAGTTCTACATCAATGTGGAACGAGAGGAGTGGAAGCTGGACACACTGTGCGACTTGTA
TGAAACCCTGACCATTACCCAGGCAGTCATCTTCATCAACACCCGAAGGAAGGTGGATTGGCTCACCGAGAAGATGCATG
CCCGAGACTTCACCGTCTCTGCCATGCACGGAGACATGGACCAAAAAGAACGAGACGTTATCATGAGGGAGTTCCGCTCT
GGCTCTAGCAGAGTATTGATTACCACTGACCTACTGGCCAGAGGTATTGATGTACAGCAAGTTTCCTTAGTCATCAACTA
TGACCTCCCCACCAATAGGGAAAACTATATCCACAGAATTGGTCGTGGCGGACGTTTCGGCCGTAAGGGTGTGGCTATTA
ACATGGTGACAGAAGAGGACAAGAGGACTCTTCGAGACATCGAAACCTTCTACAACACCTCCATTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATCTGA

Library Parental gene expression (RPM)
ERP005899_liver 63 .66 RPM
ERP005899_muscle 224 .41 RPM
SRP017611_brain 78 .48 RPM
SRP017611_kidney 145 .87 RPM
SRP017611_liver 120 .28 RPM
SRP030211_testis 141 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014724 within_species_paralog 2 retrogenes
retro_btau_258, retro_btau_522,
Loxodonta africana ENSLAFG00000001107 ortholog_one2one 1 retrogene
retro_lafr_1210,
Macropus eugenii ENSMEUG00000010780 ortholog_one2one 2 retrogenes
retro_meug_158, retro_meug_179,
Monodelphis domestica ENSMODG00000007090 ortholog_one2one 3 retrogenes
retro_mdom_1282, retro_mdom_326, retro_mdom_711,
Oryctolagus cuniculus ENSOCUG00000010375 ortholog_one2one 5 retrogenes
retro_ocun_1020, retro_ocun_1326, retro_ocun_1375, retro_ocun_475, retro_ocun_934,
Pongo abelii ENSPPYG00000007926 ortholog_one2one 7 retrogenes
retro_pabe_1090, retro_pabe_1474, retro_pabe_3759, retro_pabe_3792, retro_pabe_548, retro_pabe_846, retro_pabe_987,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1207 81.12 83.00
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Download FASTA sequences of all ENSBTAG00000000132 retrocopies