Parental gene:

NUP50, ENSPPYG00000011928

Aliases:None
Description:nucleoporin 50kDa [Source:HGNC Symbol;Acc:8065]
Organism:Orangutan (Pongo abelii)
Coordinates:22:40573018..40598111(+)


>ENSPPYG00000011928
ATGGCCAAAAGAAATGCCGAGAAGGAACTGACAGATAGGAATTGGGATCAAGAAGATGAAGCTGAAGAGGTGGGAACATT
CTCCCTGGCCAGTGAGGAAGTCTTGAAGAATAGAGCCATAAAGAAAGCAAAGCGCAGAAATGTTGGATTCGAATCTGACA
GTGGAGGAGCCTTTAAAGGTTTTAAAGGTTTGGTGGTACCTTCTGGAGGAGGACGGTTTCCTGGATTTGGTAGTGGCGCT
GGAGGGAAGCCTTTGGAAGGACTGTCGAATGGAAACAACATAACCAGTGCCCCTCCCTTCACCAGTGCAAAGGCAGCGGC
AGAGCCCAAGGTAGCCTTTGGTTCTCTTCCTGCAAATGGCCCTACCGCCTTGGTTGATAAAGTTTCAAATCCCAAAACTA
ATGGGGACAGTCAGCAGCCCTCCTCCTCTGGCCTTGCTTCCAGTAAAGCTTGTGTCGGAAGTGCCTATCACAAGCAGTTG
GCCGCCTTGAACTGCTCCGTGCGGGATTGGATAGTGAAGCACGTGAATACAAACCCCCTCTGTGATCTGACACCTATCTT
TAAAGACTATGAGAAATATTTAGCAAACATTGAACAGCAACACGGGAACAGTGGCAGGAATTCTGAAAGTGAACCTAACA
AAGTGGCGGCTGAAACACAGTCTCCTTCCCTTTTTGGCTCAACAAAATTACAGCAAGAGTCAACGTTTTTGTTTCATGGC
AACAAAACTGAAGATACACCTGACAAGAAGGTGGAGGTGGCATCTGAAAAGAAAACGGACCCATCATCACTAGGAGCGAC
AAGTGCCTCATTTAATTTCGGCAAGAAAGTTGATAGCTCTGTTTTGGGCTCATTAAGCTCCGTCCCCCTGACTGGATTTT
CTTTCTCCCCTGGAAACTCCAGTGTATTTGGCAAAGATATTACCCAGAGTAAACCAGTCTCTTCACCATTTCCCACTAAA
CCATTGGAGGGCCAAGCGGAGGGTTACAGTGGTGAATGCAAAGGTGGAGATGAAGAAGAGAATGAAGAGCCACCCAAAGT
AGTAGTTACCGAAGTAAAAGAAGAAGATGCTTTTTACTCCAAAAAGTGTAAACTATTTTACAAGAAAGATAATGAGTTTA
AAGAGAAAGGCATAGGTACTCTGCATTTAAAACCTACAGCAAATCAGAAGACACAGCTTTTGGTGCGGGCAGACACCAAT
TTAGGCAACATATTGCTGAATGTTCTGATTCCACCCAATATGCCATGTACGCGAACAGGGAAGAATAACGTTCTTATCGT
CTGTGTTCCAAATCCACCAATTGACGAGAAGAATGCCACCATGCCAGTCACCATGTTGATTCGGGTGAAAACCAGCGAGG
ATGCAGACGAGTTGCACAAAATTTTACTGGAGAAAAAGGATGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 38 .76 RPM
SRP007412_cerebellum 36 .12 RPM
SRP007412_heart 8 .43 RPM
SRP007412_kidney 21 .38 RPM
SRP007412_liver 19 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016242 ortholog_one2many 1 retrogene
retro_cjac_4080,
Homo sapiens ENSG00000093000 ortholog_one2one 3 retrogenes
retro_hsap_1429, retro_hsap_3301, retro_hsap_3434,
Microcebus murinus ENSMICG00000006840 ortholog_one2one 1 retrogene
retro_mmur_534,
Mus musculus ENSMUSG00000016619 possible_ortholog 1 retrogene
retro_mmus_1905,
Nomascus leucogenys ENSNLEG00000013154 ortholog_one2one 2 retrogenes
retro_nleu_1359, retro_nleu_1844,
Otolemur garnettii ENSOGAG00000002320 ortholog_one2one 1 retrogene
retro_ogar_942,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2723 92.08 99.57
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000011928 retrocopies