Parental gene:

UBE2E3, ENSPPYG00000012987

Aliases:None
Description:ubiquitin-conjugating enzyme E2E 3 [Source:HGNC Symbol;Acc:12479]
Organism:Orangutan (Pongo abelii)
Coordinates:2b:71325149..71408869(+)


>ENSPPYG00000012987
ATGTCCAGTGATAGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGCAGTTCAGATGCGGACCAGCGAGACCC
AGCCGCTCCAGAGCCTGAAGAACAAGAGGAAAGAAAACCTTCTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCA
AAACCACTGCTAAGTTATCCACTAGTGCTAAAAGAATTCAGAAGGAGCTAGCTGAAATAACCCTTGATCCTCCTCCTAAT
TGCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCAACTATACTTGGTCCACCGGGTTCTGTATATGAAGG
TGGTGTGTTTTTTCTGGATATCACATTTTCATCAGATTATCCATTTAAGCCACCAAAGGTTACTTTCCGCACCAGAATCT
ATCACTGCAACATCAACAGTCAGGGAGTCATCTGTCTGGACATCCTTAAAGACAACTGGAGTCCCGCTTTGACTATTTCA
AAGGTTTTGCTGTCTATTTGTTCCCTTTTGACAGACTGCAACCCTGCGGATCCTCTGGTTGGAAGCATAGCCACTCAGTA
TTTGACCAACAGAGCAGAACACGACAGGATAGCCAGACAGTGGACCAAGAGATACGCAACATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 16 .48 RPM
SRP007412_cerebellum 25 .54 RPM
SRP007412_heart 9 .09 RPM
SRP007412_kidney 19 .06 RPM
SRP007412_liver 8 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014163 ortholog_one2one 3 retrogenes
retro_cfam_2076, retro_cfam_2161, retro_cfam_27,
Choloepus hoffmanni ENSCHOG00000007325 ortholog_one2one 3 retrogenes
retro_chof_1756, retro_chof_2077, retro_chof_2358,
Ciona intestinalis ENSCING00000006860 ortholog_one2many 1 retrogene
retro_cint_33,
Callithrix jacchus ENSCJAG00000011559 ortholog_one2one 3 retrogenes
retro_cjac_3194, retro_cjac_3911, retro_cjac_3967,
Equus caballus ENSECAG00000007233 ortholog_one2one 1 retrogene
retro_ecab_196,
Echinops telfairi ENSETEG00000019324 ortholog_one2one 2 retrogenes
retro_etel_314, retro_etel_848,
Monodelphis domestica ENSMODG00000010301 ortholog_one2one 2 retrogenes
retro_mdom_1679, retro_mdom_1688,
Mus musculus ENSMUSG00000027011 ortholog_one2one 4 retrogenes
retro_mmus_2814, retro_mmus_3123, retro_mmus_3416, retro_mmus_3571,
Otolemur garnettii ENSOGAG00000014956 ortholog_one2one 4 retrogenes
retro_ogar_1343, retro_ogar_2512, retro_ogar_2682, retro_ogar_3443,
Pongo abelii ENSPPYG00000011602 other_paralog 1 retrogene
retro_pabe_99,
Pongo abelii ENSPPYG00000014967 other_paralog 1 retrogene
retro_pabe_91,
Pongo abelii ENSPPYG00000015844 other_paralog 6 retrogenes
retro_pabe_1016, retro_pabe_1164, retro_pabe_1257, retro_pabe_2330, retro_pabe_30, retro_pabe_3670,
Pongo abelii ENSPPYG00000029727 other_paralog 1 retrogene
retro_pabe_3573,
Rattus norvegicus ENSRNOG00000004544 ortholog_one2one 1 retrogene
retro_rnor_1236,
Tupaia belangeri ENSTBEG00000009932 ortholog_one2one 2 retrogenes
retro_tbel_1986, retro_tbel_3294,
Tarsius syrichta ENSTSYG00000002281 ortholog_one2one 5 retrogenes
retro_tsyr_1393, retro_tsyr_1809, retro_tsyr_1842, retro_tsyr_1942, retro_tsyr_457,
Tursiops truncatus ENSTTRG00000001361 ortholog_one2one 1 retrogene
retro_ttru_1056,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3614 91.00 96.14
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Download FASTA sequences of all ENSPPYG00000012987 retrocopies