Parental gene: | SHQ1, ENSPPYG00000013717 |
| Aliases: | None |
| Description: | SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:25543] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 3:72778578..72882937(+) |
>ENSPPYG00000013717
ATGCTGACCCCGGCGTTCGACCTCAGCCAGGATCCGGACTTCCTGACTATCGCCATCCGCGTGCCCTACGCCCGGGTCTC
CGAGTTCGACGTCTACTTCGAGGGATCTGACTTCAAGTTCTACGCCAAGCCATACTTTCTCAGATTAACCCTTCCTGGAA
GAATTGTAGAAAATGGAAGCGAGCAAGGGTCCTATGATGCAGATAAAGGAATTTTTACCATTCGCCTGCCCAAAGAAACC
CCTGGCCAGCATTTTGAGGGGCTGAACATGTTAACTGCTCTTCTGGCACCAAGAAAATCCAGGACAGCAAAACCACTTGT
GGAAGAAATAGGTGCTTCTGAGATTCCTGAGGAAGTAGTTGACGATGGAGAGTTTGATTGGGAAATTGAGCAGACACCCT
ATGAAGAGGTATCAGAAAGTGATTTGAATCCGCAGTGCCACTATGGATTTGGAAACTTACGATCAGGAGTGTTGCAGCGG
TTACAGGATGAATTGAGTGATGTTATTGATGTTAAGGATCCAGATTTCACCTCTGCAGCTGAACGAAGACAGAAGCGCCT
AGCCGCTGAGCTGGCCAAGTTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGACGAGGCGATTGAACAGATTTTGA
AGTATAATCCTTGGTGGACTGACAAATATTCAAAAATGACGGCCTTTTTGGAAAAGAGTCAGGAGCAAGAAAATCATGCT
ACATTAGTGTCTTTTTCTGAAGAAGAGAAATATCAGCTACGAAAATTTGTCAATAAATCTTATCTGCTGGACAAGAGAGC
CTGTCGTCAAGTGTACTACAGTTTGATTGATATCCTTCTGGCATATTGCTATGAAACCCGTGTCACTGAAGGAGAGAAGA
ATGTTGAATCTGCATGGAATATCAGGAAACTAAGTCCAACACTATGCTGGTTTGAGACTTGGACTAACGTTCATGATATC
ATGGTGTCTTTTGGAAGAAGGGTGTTGTGTTACCCACTCTATCGCCATTTCAAGCTGGTGATGAAGGCCTACAGGGACAC
TATAAAGATATTGCAACTGGGTAAAAGTGCAGTTTTAAAGTGTCTCCTGGATATTCACAAAATTTTTCAGGAAAATGACC
CAGCGTACATACTGAATGATCTCTACATCTCAGACTACTGTGTGTGGATTCAGAAAGTCAAATCCAAAAAGTTGGCAGCT
CTTGCAGAAGCCTTAAAGGAAGTCTCCCTTACAAAGGCCCAGCTGGGGTTAGAACTGGAAGAACTAGAAGCAGCAGCACT
GCTTGTCCAGGAGGAAGAAACTGCATTAAAAGCAGCCCATTCAGTTTCTGGGCAGCAGACACTTTGCTCCAGCTCTGAGG
CAAGTGATTCGGAGGACTTGGACAGCACCGTGTCATCTGGAAACGAAGACTCAGACTCAGATTCAGAACAAGATGAACTC
CAAGATAGTCCATCTGAGACAGTCAATTCTTTGCAAGGTCCCTTTCTTGAAGAAAGCAGTGCCCTTCTTATTGTTGATGG
TGGAGTACGCAGAAACACAGCCATCCAGGAGTCTGATGCCAGTCAGGGAAAGTCACTTGCCTCTTCCCAGCCTCTTGGAG
TGTCTGGGCCTCTGATAGAGGAGCTTGGGGAACAACTGAAGACTACAGTTCAGGTTTCTGAACCCAAGGGCACCACTGCT
GTAAACCGCAGCAATACGCAGGAGAGAGACGGCTGTCAGACCCCAAATAATTGA
ATGCTGACCCCGGCGTTCGACCTCAGCCAGGATCCGGACTTCCTGACTATCGCCATCCGCGTGCCCTACGCCCGGGTCTC
CGAGTTCGACGTCTACTTCGAGGGATCTGACTTCAAGTTCTACGCCAAGCCATACTTTCTCAGATTAACCCTTCCTGGAA
GAATTGTAGAAAATGGAAGCGAGCAAGGGTCCTATGATGCAGATAAAGGAATTTTTACCATTCGCCTGCCCAAAGAAACC
CCTGGCCAGCATTTTGAGGGGCTGAACATGTTAACTGCTCTTCTGGCACCAAGAAAATCCAGGACAGCAAAACCACTTGT
GGAAGAAATAGGTGCTTCTGAGATTCCTGAGGAAGTAGTTGACGATGGAGAGTTTGATTGGGAAATTGAGCAGACACCCT
ATGAAGAGGTATCAGAAAGTGATTTGAATCCGCAGTGCCACTATGGATTTGGAAACTTACGATCAGGAGTGTTGCAGCGG
TTACAGGATGAATTGAGTGATGTTATTGATGTTAAGGATCCAGATTTCACCTCTGCAGCTGAACGAAGACAGAAGCGCCT
AGCCGCTGAGCTGGCCAAGTTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGACGAGGCGATTGAACAGATTTTGA
AGTATAATCCTTGGTGGACTGACAAATATTCAAAAATGACGGCCTTTTTGGAAAAGAGTCAGGAGCAAGAAAATCATGCT
ACATTAGTGTCTTTTTCTGAAGAAGAGAAATATCAGCTACGAAAATTTGTCAATAAATCTTATCTGCTGGACAAGAGAGC
CTGTCGTCAAGTGTACTACAGTTTGATTGATATCCTTCTGGCATATTGCTATGAAACCCGTGTCACTGAAGGAGAGAAGA
ATGTTGAATCTGCATGGAATATCAGGAAACTAAGTCCAACACTATGCTGGTTTGAGACTTGGACTAACGTTCATGATATC
ATGGTGTCTTTTGGAAGAAGGGTGTTGTGTTACCCACTCTATCGCCATTTCAAGCTGGTGATGAAGGCCTACAGGGACAC
TATAAAGATATTGCAACTGGGTAAAAGTGCAGTTTTAAAGTGTCTCCTGGATATTCACAAAATTTTTCAGGAAAATGACC
CAGCGTACATACTGAATGATCTCTACATCTCAGACTACTGTGTGTGGATTCAGAAAGTCAAATCCAAAAAGTTGGCAGCT
CTTGCAGAAGCCTTAAAGGAAGTCTCCCTTACAAAGGCCCAGCTGGGGTTAGAACTGGAAGAACTAGAAGCAGCAGCACT
GCTTGTCCAGGAGGAAGAAACTGCATTAAAAGCAGCCCATTCAGTTTCTGGGCAGCAGACACTTTGCTCCAGCTCTGAGG
CAAGTGATTCGGAGGACTTGGACAGCACCGTGTCATCTGGAAACGAAGACTCAGACTCAGATTCAGAACAAGATGAACTC
CAAGATAGTCCATCTGAGACAGTCAATTCTTTGCAAGGTCCCTTTCTTGAAGAAAGCAGTGCCCTTCTTATTGTTGATGG
TGGAGTACGCAGAAACACAGCCATCCAGGAGTCTGATGCCAGTCAGGGAAAGTCACTTGCCTCTTCCCAGCCTCTTGGAG
TGTCTGGGCCTCTGATAGAGGAGCTTGGGGAACAACTGAAGACTACAGTTCAGGTTTCTGAACCCAAGGGCACCACTGCT
GTAAACCGCAGCAATACGCAGGAGAGAGACGGCTGTCAGACCCCAAATAATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .82 RPM |
| SRP007412_cerebellum | 4 .13 RPM |
| SRP007412_heart | 2 .74 RPM |
| SRP007412_kidney | 3 .08 RPM |
| SRP007412_liver | 3 .37 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015131 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000144736 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000034818 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002731 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015106 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_546 | 82.41 | 99.83 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000013717 retrocopies