Parental gene:

SHQ1, ENSPTRG00000015106

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:74054812..74160272(-)


>ENSPTRG00000015106
ATGCTGACCCCGGCGTTCGACCTCAGCCAGGATCCGGACTTCCTGACTATCGCCATCCGCGTGCCCTACGCCCGGGTCTC
CGAGTTCGACGTCTACTTCGAGGGGTCTGACTTCAAGTTCTACGCCAAGCCATACTTTCTCAGATTAACCCTTCCTGGAA
GAATTGTAGAAAATGGAAGCGAGCAAGGGTCCTATGATGCAGATAAAGGAATTTTTACCATTCGCCTGCCCAAAGAAACC
CCTGGCCAGCATTTTGAGGGGCTGAACATGTTAACTGCTCTTCTGGCACCAAGAAAATCCAGGACAGCAAAACCACTTGT
GGAAGAAATAGGTGCTTCTGAGATTCCTGAGGAAGTAGTTGATGATGAAGAGTTTGATTGGGAAATTGAGCAGACACCTT
ATGAAGAGGTATCAGAAAGTGCTTTGAATCCGCAGTGCCACTATGGATTTGGAAACTTACGATCAGGAGTGTTGCAGCGG
TTACAGGATGAACTGAGTGATGTTATTGATATTAAGGATCCAGATTTCACCCCTGCAGCTGAACGAAGACAGAAGCGCCT
GGCCGCTGAGCTGGCCAAGTTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGACGAGGCGATTGAACAGATTTTGA
AGTATAACCCTTGGTGGACTGACAAATATTCAAAAATGACGGCCTTTTTGGAAAAGAGTCAGGAACAAGAAAATCATGCT
ACATTAGTGTCTTTTTCTGAAGAAGAGAAATATCAGCTACGAAAATTTGTCAATAAATCTTATCTGCTGGACAAGAGAGC
CTGTCGTCAAGTGTGCTACAGTTTGATTGATATCCTTCTGGCATATTGCTATGAAACCCGTGTCACTGAAGGAGAGAAGA
ATGTTGAATCTGCATGGAATATCAGGAAACTGAGTCCAACACTATGCTGGTTTGAGACTTGGACTAACGTTCATGATATC
ATGGTGTCTTTTGGAAGAAGGGTGTTGTGTTACCCACTCTATCGCCATTTCAAGCTGGTGATGAAGGCCTACAGGGACAC
TATAAAGATATTGCAACTGGGTAAAAGTGCAGTTTTAAAGTGTCTCCTGGATATTCACAAAATTTTTCAGGAAAATGACC
CAGCGTACATACTGAATGATCTCTACATCTCAGACTACTGTGTGTGGATTCAGAAAGTCAAATCCAAAAAGTTGGCAGCT
CTTGCAGAAGCCTTAAAGGAAGTCTCCCTTACAAAGGCCCAGCTGGGGTTAGAACTGGAAGAACTAGAAGCAGCAGCACT
GCTTGTCCAGGAGGAAGAAACTGCATTAAAAGCAGCCCATTCAGTTTCTGGGCAGCAGACACTTTGCTCCAGCTCTGAGG
CAAGTGATTCGGAGGACTCAGACAGCAGCGTGTCATCTGGAAACGAAGACTCAGGCTCAGATTCAGAACAAGATGAACTC
AAAGATAGTCCATCTGAGACAGTCAGTTCTTTGCAAGGTCCCTTTCTTGAAGAAAGCAGTGCCTTTCTTATTGTTGATGG
TGGAGTACGCAGAAACACAGCCATCCAGGAGTCTGATGCCAGTCAGGGAAAGCCACTTGCCTCTTCCTGGCCTCTTGGAG
TGTCTGGGCCTCTGATAGAGGAGCTTGGGGAACAACTGAAGACTACAGTTCAGGTTTCTGAACCCAAGGGCACCACTGCT
GTAAACCGCAGCAATATTCAGGAGAGAGACGGCTGTCAGACACCAAATAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .38 RPM
SRP007412_cerebellum 6 .70 RPM
SRP007412_heart 6 .97 RPM
SRP007412_kidney 11 .79 RPM
SRP007412_liver 6 .55 RPM
SRP007412_testis 10 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015131 ortholog_one2one 1 retrogene
retro_cjac_1045,
Homo sapiens ENSG00000144736 ortholog_one2one 1 retrogene
retro_hsap_674,
Gorilla gorilla ENSGGOG00000034818 ortholog_one2one 1 retrogene
retro_ggor_581,
Nomascus leucogenys ENSNLEG00000002731 ortholog_one2one 1 retrogene
retro_nleu_463,
Pongo abelii ENSPPYG00000013717 ortholog_one2one 1 retrogene
retro_pabe_546,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_486 85.69 99.83
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Download FASTA sequences of all ENSPTRG00000015106 retrocopies