Parental gene:

DSE, ENSPPYG00000016948

Aliases:None
Description:dermatan sulfate epimerase [Source:HGNC Symbol;Acc:21144]
Organism:Orangutan (Pongo abelii)
Coordinates:6:118650713..118717057(+)


>ENSPPYG00000016948
ATGAGGACTCACACACGGGGGGCTCCCAGTGTGTTTTTCATATATTTGCTTTGCTTTGTGTCAGCCTACATCACCGACGA
GAACCCAGAAGTCATGATTCCCTTCACCAATGCCAACTACGACAGCCATCCCATGCTGTACTTCTCCAGGGCAGAAGTGG
CGGAGCTGCAGCGCAGGGCTGCCAGCTCGCACGAGCACATTGCAGCCCGCCTCACGGAGGCTGTGCACACGATGCTGTCC
AGCCCCTTGGAATACCTCCCTCCCTGGGATCCCAAGGACTACAGTGCTCGCTGGAATGAAATTTATGGAAACAACTTGGG
TGCCTTGGCAATGTTCTGTGTGCTGTATCCTGAGAACATTGAAGCCCGAGACATGGCCAAAGACTACATGGAAAGGATGG
CAGCGCAGCCTAGTTGGTTGGTGAAAGATGCTCCTTGGGATGAGGTCCCGCTTGCTCACTCCCTGGTTGGTTTTGCCACT
GCTTATGACTTCTTGTACAACTACCTGAGCAAGACACAACAGGAGAAGTTTCTTGAAGTGATTGCCAATGCCTCAGGGTA
TATGTATGAAACTTCATACAGGAGAGGATGGGGATTTCAATACCTGCACAATCATCAGCCCACCAACTGTATGGCTTTGC
TCACAGGAAGCCTAGTCCTGATGAATCAAGGATATCTTCAAGAAGCCTACTTATGGACCAAACAAGTTCTGACCATCATG
GAGAAATCTCTGGTCTTGCTCAGGGAGGTGACGGATGGCTCCCTCTATGAAGGAGTTGCGTATGGCAGCTACACCACTAG
ATCACTCTTCCAATACATGTTTCTCGTCCAGAGGCACTTCAACATCAACCACTTTGGCCATCCGTGGCTTAAACAACACT
TTGCATTTATGTATAGAACCATCCTGCCAGGGTTTCAAAGGACTGTGGCTATTGCGGACTCAAATTACAACTGGTTTTAT
GGTCCAGAAAGCCAATTAGTGTTCCTTGATAAATTTGTCATGCGTAACGGCAGTGGTAACTGGCTAGCTGACCAAATCAG
AAGGAACCGTGTGGTGGAAGGTCCAGGAACACCATCCAAAGGGCAGCGCTGGTGCACTCTGCACACGGAATTTCTCTGGT
ATGATGCCAGCTTGAAATCGGTTCCTCCTCCAGACTTTGGCACCCCTACACTGCATTATTTTGAAGACTGGGGTGTCGTG
ACTTATGGAAGTGCACTACCTGCAGAAATCAATAGATCTTTCCTTTCCTTCAAGTCTGGAAAACTGGGGGGACGTGCAAT
ATATGATATTGTCCACAGAAACAAATACAAAGATTGGATCAAAGGATGGAGAAATTTTAATGCAGGGCATGAACATCCTG
ATCAAAACTCATTTACTTTTGCTCCCAATGGTGTGCCTTTCATTACTGAGGCTCTGTATGGGCCAAAGTACACCTTCTTC
AACAATGTTTTGATGTTTTCCCCAGCTGTGTCAAAGAGCTGCTTTTCTCCCTGGGAGGGTCAGGTCACAGAAGACTGCTC
ATCAAAATGGTCTAAGTACAAGCATGACCTGGCAGCTAGTTGTCAGGGGAGGGTGGTTGCAGCAGAGGAGAAAAATGGGG
TGGTTTTTATCCGAGGAGAAGGTGTGGGAGCTTATAACCCCCAGCTCAACCTGAAGAATGTTCAGAGGAATCTCATCCTC
CTACATCCACAGCTGCTTCTCCTTGTAGACCAAATACACCTGGGAGAGGAGAGTCCCCTGGAGACAGCAGCGAGCTTCTT
CCACAATGTGGATGTTCCTTTTGAGGAGACTGTGGTAGACGGTGTCCATGGGGCTTTCATCAGGCAGAGAGATGGTCTCT
ATAAAATGTACTGGATGGACGATACTGGCTACAGTGAGAAAGCAACCTTTGCCTCAGTGACATATCCTCGGGGCTATCCC
TACAACGGGACAAACTATGTGAATGTCACCATGCACCTCCGAAGTCCCATCACCAGGGCAGCTTACCTCTTCATAGGGCC
ATCTATAGATGTTCAGAGCTTCACCGTCCATGGAGACTCTCAGCAACTGGATGTGTTCGTAGCCACCAGCAAACATGCCT
ACGCCACGTACCTGTGGACAGGTGAGGCCACAGGACAGTCTGCCTTTGCACAGGTCATTGCTGATCGTCACAAAATTCTG
TTTGACCGGAATTCAGCCATCAAGAGCAGCATTGTCCCTGAGGTGAAGGACTATGCTGCTATTGTGGAACAGAACTTGCA
GCATTTTAAACCAGTGTTTCAGCTGCTGGAGAAGCAGATACTGTCCCGAGTCCGGAACACAGCTAGCTTTAGGAAGACTG
CTGAGCGCCTGCTGAGATTTTCAGATAAGAGACAGACTGAGGAGGCCATTGACAGAATTTTTGCCATATCACAGCAACAG
CAGCAGCAAAGCAAGTCAAAGAAAAACCGAAGGGCAGGCAAACGCTATAAATTTGTGGATGCTGTCCCTGATATTTTTGC
ACAGATTGAAGTCAATGAGAAAAAGATTAGACAGAAAGCTCAGATTTTGGCACAGAAAGAACTACCCATAGATGAAGATG
AAGAAATGAAAGACCTTTTAGATTTTGCAGATGTAACATACGAGAAACATAAAAATGGGGGCTTGATTGAAGGCCGGTTT
GGACAGGCACGGATGGTGACAACTACTCACAGCAGGGCCCCATCACTGTCTGCTTCCTATACCAGGTTGTTCCTGATTCT
GAACATTGCTATTTTCTTTGTCATGTTGGCAATGCAACTGACTTATTTCCAGAAGGCCCAGAGCCTACATGGCCAAAGAT
GTCTTTATGCAGTTCTTCTAATAGATAGCTGTATTTTATTATGGTTGTACTCTTCTTGTTCCCAATCACAGTGTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .48 RPM
SRP007412_cerebellum 3 .16 RPM
SRP007412_heart 6 .92 RPM
SRP007412_kidney 5 .77 RPM
SRP007412_liver 15 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013791 ortholog_one2one 1 retrogene
retro_acar_15,
Callithrix jacchus ENSCJAG00000004530 ortholog_one2one 1 retrogene
retro_cjac_1174,
Homo sapiens ENSG00000111817 ortholog_one2one 1 retrogene
retro_hsap_4178,
Gorilla gorilla ENSGGOG00000026746 ortholog_one2one 2 retrogenes
retro_ggor_1419, retro_ggor_2802,
Nomascus leucogenys ENSNLEG00000013106 ortholog_one2one 1 retrogene
retro_nleu_2476,
Pan troglodytes ENSPTRG00000018529 ortholog_one2one 1 retrogene
retro_ptro_2833,
Sorex araneus ENSSARG00000010799 ortholog_one2one 1 retrogene
retro_sara_560,
Takifugu rubripes ENSTRUG00000006239 ortholog_one2one 1 retrogene
retro_trub_32,
Xenopus tropicalis ENSXETG00000032776 ortholog_one2one 1 retrogene
retro_xtro_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3418 87.33 100.00
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2. retro_pabe_3517 88.55 77.77
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Download FASTA sequences of all ENSPPYG00000016948 retrocopies