Parental gene:

ENSPPYG00000020460

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:X:69594649..69617647(+)


>ENSPPYG00000020460
ATGCCGCCCAAAGGAAAAAGTGGTTCTGGAAAAGCGGGGAAAGGGGGAGCAGCATCTGGGAGTGACAGTGCTGACAAGAA
GGCTCAGGGTCCCAAAGGTGGTGGCAATGCAGTAAAGGTCAGACACATTCTATGTGAAAAACATGGCAAAATCATGGAAG
CCATGGAAAAGTTAAAGTCTGGGATGAGATTCAATGAAGTGGCCGCACAGTATAGTGAAGATAAAGCCAGGCAAGGGGGC
GACTTGGGTTGGATGACCAGAGGGTCCATGGTGGGACCATTTCAAGAAGCAGCATTTGCCTTGCCTGTAAGTGGGATGGA
TAAGCCTGTGTTTACAGACCCACCGGTTAAGACAAAATTTGGATATCATATTATTATGGTTGAAGGAAGAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .48 RPM
SRP007412_cerebellum 3 .16 RPM
SRP007412_heart 2 .29 RPM
SRP007412_kidney 4 .08 RPM
SRP007412_liver 3 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005801 ortholog_one2many 1 retrogene
retro_amel_1553,
Canis familiaris ENSCAFG00000032230 ortholog_many2many 1 retrogene
retro_cfam_212,
Callithrix jacchus ENSCJAG00000004992 possible_ortholog 10 retrogenes
retro_cjac_1218, retro_cjac_1587, retro_cjac_1631, retro_cjac_1720, retro_cjac_1729, retro_cjac_1746, retro_cjac_1863, retro_cjac_2670, retro_cjac_2704, retro_cjac_2829,
Cavia porcellus ENSCPOG00000011401 ortholog_one2many 1 retrogene
retro_cpor_631,
Dipodomys ordii ENSDORG00000006985 ortholog_one2many 2 retrogenes
retro_dord_109, retro_dord_352,
Felis catus ENSFCAG00000012036 ortholog_one2many 5 retrogenes
retro_fcat_1325, retro_fcat_1411, retro_fcat_581, retro_fcat_723, retro_fcat_769,
Homo sapiens ENSG00000102309 ortholog_one2many 3 retrogenes
retro_hsap_1562, retro_hsap_1604, retro_hsap_304,
Gorilla gorilla ENSGGOG00000016008 ortholog_one2many 4 retrogenes
retro_ggor_1187, retro_ggor_1210, retro_ggor_328, retro_ggor_338,
Loxodonta africana ENSLAFG00000018261 ortholog_one2many 1 retrogene
retro_lafr_212,
Macropus eugenii ENSMEUG00000003611 ortholog_one2many 1 retrogene
retro_meug_368,
Microcebus murinus ENSMICG00000001640 ortholog_one2many 4 retrogenes
retro_mmur_138, retro_mmur_294, retro_mmur_483, retro_mmur_674,
Myotis lucifugus ENSMLUG00000012073 ortholog_one2many 2 retrogenes
retro_mluc_2189, retro_mluc_923,
Mustela putorius furo ENSMPUG00000005287 ortholog_one2many 3 retrogenes
retro_mputfur_1285, retro_mputfur_417, retro_mputfur_858,
Mus musculus ENSMUSG00000079480 ortholog_one2many 8 retrogenes
retro_mmus_1656, retro_mmus_1703, retro_mmus_2205, retro_mmus_2741, retro_mmus_2921, retro_mmus_3673, retro_mmus_399, retro_mmus_821,
Nomascus leucogenys ENSNLEG00000018119 possible_ortholog 1 retrogene
retro_nleu_2957,
Oryctolagus cuniculus ENSOCUG00000008715 ortholog_many2many 2 retrogenes
retro_ocun_137, retro_ocun_835,
Rattus norvegicus ENSRNOG00000050051 ortholog_one2many 6 retrogenes
retro_rnor_1755, retro_rnor_2368, retro_rnor_2575, retro_rnor_2576, retro_rnor_480, retro_rnor_553,
Sorex araneus ENSSARG00000003732 ortholog_one2many 2 retrogenes
retro_sara_201, retro_sara_248,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_146 100.00 100.00
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2. retro_pabe_384 75.86 66.41
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Download FASTA sequences of all ENSPPYG00000020460 retrocopies