RetrogeneDB ID: | retro_rnor_553 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:273422883..273423273(+) | ||
Located in intron of: | ENSRNOG00000026048 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pin4 | ||
Ensembl ID: | ENSRNOG00000050051 | ||
Aliases: | None | ||
Description: | protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Source:MGI Symbol;Acc:MGI:1916963] |
Percent Identity: | 87.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPPKGKSGSGKGGKGGAASGSDSADKKSQGPKGGGNAVKVRHILC-EKHGKIMEAMEKLKSGMRFSEVAT |
MPPKGKSGSGKGGKG..ASG.D.ADK.SQGPKGGGN.VKVRHILC.EKHGKIMEAMEK.KSGMR.SEV.T | |
Retrocopy | MPPKGKSGSGKGGKGSTASGGDNADK-SQGPKGGGNSVKVRHILC>EKHGKIMEAMEKFKSGMRSSEVST |
Parental | QYSEDKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPV-KTKFGYHIIMVEGRK |
QYS.D.ARQGGDLGWMT.GSMVGPFQEAAFALPVSGMDKPVFTDP.V.KT.FGYHIIMVEGRK | |
Retrocopy | QYSKDTARQGGDLGWMTGGSMVGPFQEAAFALPVSGMDKPVFTDPQV<KTTFGYHIIMVEGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .26 RPM |
SRP017611_liver | 0 .00 RPM | 7 .87 RPM |