RetrogeneDB ID: | retro_fcat_1325 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:20978737..20979116(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIN4 | ||
Ensembl ID: | ENSFCAG00000012036 | ||
Aliases: | None | ||
Description: | protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Source:HGNC Symbol;Acc:8992] |
Percent Identity: | 66.41 % |
Parental protein coverage: | 86.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KMPPKGKSRSGKGGKGGAASGSDSSDKKAQGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAI |
KMPP..K...G.G.......G........QG.KGGGNAVKVRHILCE..GK.ME.MEKLKSGM.F.EV.. | |
Retrocopy | KMPP--KGKRGSGKR--EKGGATIR*QSWQGHKGGGNAVKVRHILCENYGKSMETMEKLKSGMQFSEVIA |
Parental | QYSEDKARQGGDLGWMTRGTMVGPFQEAAFALPISGLD-KPVFTDPPVKTKFGYHIIMVEG |
.Y.EDKARQGGDL.WMTRG.MV.PFQE.AFAL...GLD.KPVFTD..VKTKFG.H.IMVEG | |
Retrocopy | WYREDKARQGGDLDWMTRGSMVEPFQETAFALLAMGLD>KPVFTDSLVKTKFGCHLIMVEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .47 RPM |
SRP017611_liver | 0 .00 RPM | 5 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005801 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004992 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000011401 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006985 | 2 retrocopies | |
Felis catus | ENSFCAG00000012036 | 5 retrocopies | |
Homo sapiens | ENSG00000102309 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016008 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000018261 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003611 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001640 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000012073 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005287 | 3 retrocopies | |
Mus musculus | ENSMUSG00000079480 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000018119 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008715 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020460 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000050051 | 6 retrocopies | |
Sorex araneus | ENSSARG00000003732 | 2 retrocopies |