Parental gene:

NFYC, ENSPTRG00000000596

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:40996738..41077319(+)


>ENSPTRG00000000596
ATGTCCACAGAAGGAGGATTTGGTGGTACTAGCAGCAGTGATGCCCAGCAAAGCCTACAGTCGTTCTGGCCTCGGGTCAT
GGAAGAAATCCGGAATTTAACAGTGAAAGACTTCCGAGTGCAGGAACTCCCACTGGCTCGTATTAAGAAGATTATGAAAC
TGGATGAAGATGTGAAGATGATCAGTGCAGAAGCGCCTGTACTCTTTGCCAAGGCAGCCCAGATTTTTATCACAGAGTTG
ACTCTTCGAGCCTGGATTCACACAGAAGATAACAAGCGCCGGACTCTGCAGAGAAATGATATCGCCATGGCAATTACAAA
ATTTGATCAGTTTGATTTTCTCATCGATATTGTTCCAAGAGATGAACTGAAACCTCCAAAGCGTCAGGAGGAGGTGCGCC
AGTCTGTAACTCCTGCTGAGCCAGTCCAGTACTATTTCACGCTGGCTCAGCAACCCACCGCTGTCCAAGTCCAGGGCCAG
CAGCAAGGCCAGCAGACCACCAGCTCCACGACCACCATCCAGCCTGGGCAGATCATCATCGCACAGCCTCAGCAGGGCCA
GACCACACCTGTGACAATGCAGGTTGGAGAAGGTCAGCAGGTGCAGATTGTCCAGGCCCAGCCACAGGGTCAAGCCCAAC
AGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGATGCAGCAGATCATCACTAACACAGGAGAGATCCAGCAGATCCCG
GTGCAGCTGAATGCCGGCCAGCTGCAGTATATCCGCTTAGCCCAGCCTGTATCAGGCACTCAAGTTGTGCAGGGACAGAT
CCAGACACTTGCCACCAATGCTCAACAGGGGCAAAGAAATGCAAGTCAGGGGAAGCCTCGAAGGTGCCTGAAAGAAACCT
TACAGATTACACAGACAGAGGTCCAGCAAGGACAGCAGCAGTTCAGCCAGTTCACAGATGGACAGCAGCTCTACCAGATC
CAGCAAGTCACCATGCCTGCGGGCCAGGACCTCGCCCAGCCCATGTTCATCCAGTCAGCCAACCAGCCCTCCGACGGGCA
GGCCCCCCAGGTGACCGGCGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 47 .39 RPM
SRP007412_cerebellum 53 .34 RPM
SRP007412_heart 28 .50 RPM
SRP007412_kidney 51 .36 RPM
SRP007412_liver 32 .64 RPM
SRP007412_testis 36 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012591 ortholog_one2many 1 retrogene
retro_acar_33,
Bos taurus ENSBTAG00000021943 ortholog_one2one 1 retrogene
retro_btau_1338,
Callithrix jacchus ENSCJAG00000002987 possible_ortholog 1 retrogene
retro_cjac_4050,
Homo sapiens ENSG00000066136 ortholog_one2one 2 retrogenes
retro_hsap_4280, retro_hsap_4668,
Gorilla gorilla ENSGGOG00000007360 ortholog_one2one 2 retrogenes
retro_ggor_2865, retro_ggor_2896,
Macropus eugenii ENSMEUG00000004480 ortholog_one2one 1 retrogene
retro_meug_1145,
Macaca mulatta ENSMMUG00000014970 ortholog_one2one 2 retrogenes
retro_mmul_1202, retro_mmul_2485,
Mus musculus ENSMUSG00000032897 ortholog_one2one 1 retrogene
retro_mmus_844,
Otolemur garnettii ENSOGAG00000012614 ortholog_one2one 2 retrogenes
retro_ogar_2147, retro_ogar_411,
Pongo abelii ENSPPYG00000001483 ortholog_one2one 3 retrogenes
retro_pabe_1712, retro_pabe_3490, retro_pabe_3628,
Pan troglodytes ENSPTRG00000012105 within_species_paralog 1 retrogene
retro_ptro_1872,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2903 87.68 77.68
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2. retro_ptro_3102 74.82 77.97
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Download FASTA sequences of all ENSPTRG00000000596 retrocopies