Parental gene: | NFYC, ENSPTRG00000000596 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:40996738..41077319(+) |
>ENSPTRG00000000596
ATGTCCACAGAAGGAGGATTTGGTGGTACTAGCAGCAGTGATGCCCAGCAAAGCCTACAGTCGTTCTGGCCTCGGGTCAT
GGAAGAAATCCGGAATTTAACAGTGAAAGACTTCCGAGTGCAGGAACTCCCACTGGCTCGTATTAAGAAGATTATGAAAC
TGGATGAAGATGTGAAGATGATCAGTGCAGAAGCGCCTGTACTCTTTGCCAAGGCAGCCCAGATTTTTATCACAGAGTTG
ACTCTTCGAGCCTGGATTCACACAGAAGATAACAAGCGCCGGACTCTGCAGAGAAATGATATCGCCATGGCAATTACAAA
ATTTGATCAGTTTGATTTTCTCATCGATATTGTTCCAAGAGATGAACTGAAACCTCCAAAGCGTCAGGAGGAGGTGCGCC
AGTCTGTAACTCCTGCTGAGCCAGTCCAGTACTATTTCACGCTGGCTCAGCAACCCACCGCTGTCCAAGTCCAGGGCCAG
CAGCAAGGCCAGCAGACCACCAGCTCCACGACCACCATCCAGCCTGGGCAGATCATCATCGCACAGCCTCAGCAGGGCCA
GACCACACCTGTGACAATGCAGGTTGGAGAAGGTCAGCAGGTGCAGATTGTCCAGGCCCAGCCACAGGGTCAAGCCCAAC
AGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGATGCAGCAGATCATCACTAACACAGGAGAGATCCAGCAGATCCCG
GTGCAGCTGAATGCCGGCCAGCTGCAGTATATCCGCTTAGCCCAGCCTGTATCAGGCACTCAAGTTGTGCAGGGACAGAT
CCAGACACTTGCCACCAATGCTCAACAGGGGCAAAGAAATGCAAGTCAGGGGAAGCCTCGAAGGTGCCTGAAAGAAACCT
TACAGATTACACAGACAGAGGTCCAGCAAGGACAGCAGCAGTTCAGCCAGTTCACAGATGGACAGCAGCTCTACCAGATC
CAGCAAGTCACCATGCCTGCGGGCCAGGACCTCGCCCAGCCCATGTTCATCCAGTCAGCCAACCAGCCCTCCGACGGGCA
GGCCCCCCAGGTGACCGGCGACTGA
ATGTCCACAGAAGGAGGATTTGGTGGTACTAGCAGCAGTGATGCCCAGCAAAGCCTACAGTCGTTCTGGCCTCGGGTCAT
GGAAGAAATCCGGAATTTAACAGTGAAAGACTTCCGAGTGCAGGAACTCCCACTGGCTCGTATTAAGAAGATTATGAAAC
TGGATGAAGATGTGAAGATGATCAGTGCAGAAGCGCCTGTACTCTTTGCCAAGGCAGCCCAGATTTTTATCACAGAGTTG
ACTCTTCGAGCCTGGATTCACACAGAAGATAACAAGCGCCGGACTCTGCAGAGAAATGATATCGCCATGGCAATTACAAA
ATTTGATCAGTTTGATTTTCTCATCGATATTGTTCCAAGAGATGAACTGAAACCTCCAAAGCGTCAGGAGGAGGTGCGCC
AGTCTGTAACTCCTGCTGAGCCAGTCCAGTACTATTTCACGCTGGCTCAGCAACCCACCGCTGTCCAAGTCCAGGGCCAG
CAGCAAGGCCAGCAGACCACCAGCTCCACGACCACCATCCAGCCTGGGCAGATCATCATCGCACAGCCTCAGCAGGGCCA
GACCACACCTGTGACAATGCAGGTTGGAGAAGGTCAGCAGGTGCAGATTGTCCAGGCCCAGCCACAGGGTCAAGCCCAAC
AGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGATGCAGCAGATCATCACTAACACAGGAGAGATCCAGCAGATCCCG
GTGCAGCTGAATGCCGGCCAGCTGCAGTATATCCGCTTAGCCCAGCCTGTATCAGGCACTCAAGTTGTGCAGGGACAGAT
CCAGACACTTGCCACCAATGCTCAACAGGGGCAAAGAAATGCAAGTCAGGGGAAGCCTCGAAGGTGCCTGAAAGAAACCT
TACAGATTACACAGACAGAGGTCCAGCAAGGACAGCAGCAGTTCAGCCAGTTCACAGATGGACAGCAGCTCTACCAGATC
CAGCAAGTCACCATGCCTGCGGGCCAGGACCTCGCCCAGCCCATGTTCATCCAGTCAGCCAACCAGCCCTCCGACGGGCA
GGCCCCCCAGGTGACCGGCGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 47 .39 RPM |
| SRP007412_cerebellum | 53 .34 RPM |
| SRP007412_heart | 28 .50 RPM |
| SRP007412_kidney | 51 .36 RPM |
| SRP007412_liver | 32 .64 RPM |
| SRP007412_testis | 36 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000012591 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000021943 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000002987 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000066136 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007360 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000004480 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000014970 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000032897 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012614 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000001483 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000012105 | within_species_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2903 | 87.68 | 77.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_3102 | 74.82 | 77.97 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000000596 retrocopies