Parental gene:

THEM4, ENSPTRG00000001301

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:130071514..130111100(-)


>ENSPTRG00000001301
ATGCTGAGGAGCTGCGCCGCGCGCCTCCGCACGCTGTGGGCTCTGTGCCGGCCGCCAGTAGGCCGGCGCCTGCCGGGAAG
CGTGCCGCGACCCGAGCTGAGGTCATTTTCTTCTGAGGAAGTCATTCTTAAGGACTGTTCTGTCCCCAACCCCAGCTGGA
ACAAGGACCTAAGACTGCTCTTTGACCAGTTTATGAAGAAATGTGAAGATGGCTCCTGGAAACGTTTGCCTTCATATAAA
CGTACACCTACTGAAAGGATTCAAGACTTCAAAACCCGTTTTCTTGACCCAAAGCTTATGAAAGAAGAACAAATGTCACA
GGCCCAGCTCTTCACCAGAAGCTTTGATGATGGCCTGGGCTTTGAATACGTGATGTTCTACAATGACATTGAGAAAAGGA
TGGTTTGCTTATTTCAAGGAGGCCCTTACCTGGAAGGACCACCTGGATTCATTCATGGAGGTGCCATTGCAACCATGATT
GATTCTACTGTTGGTATGTGTGCAATGATGGCTGGGGGAATCGTCATGACTGCCAATCTCAACATCAATTATAAAAGACC
TATCCCTCTTTGTTCTGTTGTTATGATAAATAGCCAACTTGATGAAGTTGAAGGACGGAAATTTTTTGTTTCCTGTAATG
TTCAGAGTGTTGATGAGAAGACCCTATACTCAGAGGCGACAAGCTTATTTATAAAGCTGAATCCTGCTAAAAGTCTGACA
TAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 21 .18 RPM
SRP007412_cerebellum 17 .46 RPM
SRP007412_heart 40 .98 RPM
SRP007412_kidney 58 .74 RPM
SRP007412_liver 9 .62 RPM
SRP007412_testis 30 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000355 ortholog_one2one 1 retrogene
retro_amel_1301,
Choloepus hoffmanni ENSCHOG00000000818 ortholog_one2many 1 retrogene
retro_chof_841,
Dasypus novemcinctus ENSDNOG00000005970 ortholog_one2one 1 retrogene
retro_dnov_710,
Felis catus ENSFCAG00000003443 ortholog_one2one 1 retrogene
retro_fcat_387,
Homo sapiens ENSG00000159445 ortholog_one2one 2 retrogenes
retro_hsap_1569, retro_hsap_978,
Gorilla gorilla ENSGGOG00000008114 ortholog_one2one 2 retrogenes
retro_ggor_1195, retro_ggor_782,
Microcebus murinus ENSMICG00000010696 ortholog_one2one 4 retrogenes
retro_mmur_1241, retro_mmur_1436, retro_mmur_1505, retro_mmur_1574,
Nomascus leucogenys ENSNLEG00000010322 ortholog_one2one 1 retrogene
retro_nleu_1737,
Oryctolagus cuniculus ENSOCUG00000005194 ortholog_one2one 1 retrogene
retro_ocun_1341,
Pongo abelii ENSPPYG00000000851 ortholog_one2one 1 retrogene
retro_pabe_1295,
Tupaia belangeri ENSTBEG00000003352 ortholog_one2one 2 retrogenes
retro_tbel_2412, retro_tbel_3266,
Tarsius syrichta ENSTSYG00000005739 ortholog_one2one 1 retrogene
retro_tsyr_579,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_768 93.79 60.42
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2. retro_ptro_1056 90.46 100.00
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Download FASTA sequences of all ENSPTRG00000001301 retrocopies