Parental gene: | GXYLT1, ENSPTRG00000004836 |
| Aliases: | GXYLT1, GLT8D3 |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:47287149..47350658(+) |
>ENSPTRG00000004836
ATGCGGCGCTACCTGCGCGTCGTGGTGCTGTGTGTGGCCTGCGGCTTCTGCTCGCTCCTTTACGCTTTCAGCCAGCTCGC
CGTGTCCCTGGAAGAAGGAGCGGGCGGCGGTGGCGGGAAGCCGCAGGCCGCAGTGGCTTCCTGGCTCGCGGGCGGCGGAC
GCGGCGCCGTGAGAGGCGCCGGCGTCGCGGGCCCCGCAGCGCATCCCGGCGTGTCGGACAGGTGTAAAGATTTCTCTCTG
TGTTACTGGAATCCCTATTGGATGCTGCCCTCTGATGTTTGTGGAATGAACTGCTTTTGGGAAGCGGCTTTTAGGTATAG
TCTGAAAATACAGCCTGTTGAGAAAATGCATCTAGCTGTAGTTGCCTGTGGTGAAAGACTGGAAGAAACTATGACGATGT
TGAAGTCAGCTATCATTTTCAGCATCAAACCTCTTCAATTCCATATTTTTGCTGAAGATCAGCTACATCATAGCTTTAAA
GGCAGACTTGACAACTGGTCATTTCTACAAACATTTAATTATACGTTATACCCCATAACCTTTCCAAGTGAGAATGCAGC
AGAGTGGAAAAAACTCTTTAAACCATGTGCTTCACAGAGATTGTTCTTGCCGTTAATCCTGAAAGAAGTTGACTCACTAT
TGTATGTCGACACTGATATCCTTTTTTTACGACCAGTTGATGATATTTGGTCTTTACTAAAGAAATTTAATTCCACACAA
ATTGCCGCAATGGCACCAGAACATGAGGAACCTCGAATAGGATGGTATAATCGCTTTGCTAGGCATCCATATTATGGAAA
AACTGGAGTAAACTCTGGAGTTATGTTGATGAACATGACTCGAATGAGAAGGAAGTATTTCAAGAATGATATGACAACTG
TACGACTACAATGGGGAGATATACTTATGCCATTGCTTAAAAAATACAAACTAAACATCACATGGGGTGATCAAGATCTA
TTGAATATCGTGTTTTTTCATAATCCAGAAAGCCTTTTTGTTTTTCCGTGTCAATGGAATTATCGACCAGATCATTGTAT
ATATGGAAGCAATTGCCAAGAAGCAGAAGAAGAAGGAATCTTTATTCTTCATGGGAACAGAGGTGTTTACCATGACGATA
AGCAACCAGCATTTAGAGCTGTTTATGAAGCACTGAGAAATTGTTCTTTTGAAGATGACAACATCCGTTCCTTATTAAAA
CCTTTAGAACTGGAACTACAAAAAACAGTGCATACATACTGTGGAAAAATTTACAAAATATTTATCAAACAACTAGCAAA
AAGTGTAAGAGATCGTTATGCCAGATCACCAAAGGAAAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 6 .01 RPM |
| SRP007412_cerebellum | 13 .59 RPM |
| SRP007412_heart | 7 .29 RPM |
| SRP007412_kidney | 15 .25 RPM |
| SRP007412_liver | 10 .31 RPM |
| SRP007412_testis | 18 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000151233 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027928 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000008913 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000036197 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017947 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004419 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000005234 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_848 | 79.27 | 66.26 | Please wait, loading  |
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| 2. | retro_ptro_1623 | 78.95 | 77.51 | Please wait, loading |
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| 3. | retro_ptro_2832 | 79.94 | 77.51 | Please wait, loading |
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| 4. | retro_ptro_2960 | 79.88 | 77.51 | Please wait, loading |
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| 5. | retro_ptro_3006 | 81.60 | 60.39 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000004836 retrocopies