Parental gene:

TXNDC17, ENSPTRG00000008644

Aliases:TXNDC17, TXNL5
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:6671941..6675581(+)


>ENSPTRG00000008644
ATGGCCCGCTATGAGGAGGTGAGCGTGTCCGGCTTCGAGGAGTTCCACCGGGCCGTGGAACAGCACAATGGCAAGACCAT
TTTCGCCTACTTTACGGGTTCTAAGGACGCCGGGGGGAAAAGCTGGTGCCCCGATTGCGTGCAGGCTGAACCAGTCGTAC
GAGAGGGGCTGAAGCACATTAGTGAAGGATGTGTGTTCATCTACTGCCAAGTAGGAGAAAAGCCTTATTGGAAAGATCCA
AATAATGACTTCAGAAAAAACTTGAAAGTAACAGCAGTGCCTACACTACTTAAGTATGGAACACCTCAAAAACTGGTAGA
ATCTGAGTGTCTTCAGGCCAACCTGGTGGAAATGTTGTTCTCTGAAGATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .55 RPM
SRP007412_cerebellum 4 .48 RPM
SRP007412_heart 5 .54 RPM
SRP007412_kidney 41 .14 RPM
SRP007412_liver 25 .37 RPM
SRP007412_testis 11 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007038 ortholog_one2one 4 retrogenes
retro_amel_1181, retro_amel_1267, retro_amel_148, retro_amel_344,
Callithrix jacchus ENSCJAG00000011150 ortholog_one2one 4 retrogenes
retro_cjac_2775, retro_cjac_2877, retro_cjac_2887, retro_cjac_3048,
Cavia porcellus ENSCPOG00000002887 ortholog_one2many 1 retrogene
retro_cpor_116,
Equus caballus ENSECAG00000025006 ortholog_one2one 1 retrogene
retro_ecab_430,
Echinops telfairi ENSETEG00000001905 ortholog_one2many 1 retrogene
retro_etel_14,
Felis catus ENSFCAG00000024143 ortholog_one2one 1 retrogene
retro_fcat_1128,
Homo sapiens ENSG00000129235 ortholog_one2one 2 retrogenes
retro_hsap_132, retro_hsap_2218,
Gorilla gorilla ENSGGOG00000003055 ortholog_one2one 2 retrogenes
retro_ggor_1750, retro_ggor_230,
Macropus eugenii ENSMEUG00000008946 ortholog_one2one 1 retrogene
retro_meug_1771,
Microcebus murinus ENSMICG00000006620 ortholog_one2one 2 retrogenes
retro_mmur_1093, retro_mmur_766,
Macaca mulatta ENSMMUG00000003788 ortholog_one2one 2 retrogenes
retro_mmul_365, retro_mmul_932,
Mustela putorius furo ENSMPUG00000011338 ortholog_one2one 2 retrogenes
retro_mputfur_518, retro_mputfur_564,
Mus musculus ENSMUSG00000020803 ortholog_one2one 3 retrogenes
retro_mmus_2817, retro_mmus_2818, retro_mmus_488,
Nomascus leucogenys ENSNLEG00000009230 ortholog_one2one 2 retrogenes
retro_nleu_2262, retro_nleu_2516,
Oryctolagus cuniculus ENSOCUG00000016557 ortholog_one2one 1 retrogene
retro_ocun_297,
Ochotona princeps ENSOPRG00000000509 ortholog_one2many 2 retrogenes
retro_opri_575, retro_opri_8,
Procavia capensis ENSPCAG00000003749 ortholog_one2one 1 retrogene
retro_pcap_180,
Pongo abelii ENSPPYG00000007880 ortholog_one2one 1 retrogene
retro_pabe_485,
Pteropus vampyrus ENSPVAG00000002399 ortholog_one2one 1 retrogene
retro_pvam_1187,
Rattus norvegicus ENSRNOG00000014072 ortholog_one2one 1 retrogene
retro_rnor_1700,
Sorex araneus ENSSARG00000006501 ortholog_one2many 1 retrogene
retro_sara_20,
Ictidomys tridecemlineatus ENSSTOG00000021986 ortholog_one2one 2 retrogenes
retro_itri_197, retro_itri_574,
Tupaia belangeri ENSTBEG00000000539 ortholog_one2one 1 retrogene
retro_tbel_3760,
Tarsius syrichta ENSTSYG00000010996 ortholog_one2one 2 retrogenes
retro_tsyr_1058, retro_tsyr_982,
Tursiops truncatus ENSTTRG00000012072 ortholog_one2one 1 retrogene
retro_ttru_1252,
Vicugna pacos ENSVPAG00000001554 ortholog_one2one 1 retrogene
retro_vpac_501,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_137 83.33 58.54
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2. retro_ptro_1683 62.90 100.00
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Download FASTA sequences of all ENSPTRG00000008644 retrocopies