RetrogeneDB ID: | retro_itri_574 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393302.1:14926627..14926996(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXNDC17 | ||
Ensembl ID: | ENSSTOG00000021986 | ||
Aliases: | None | ||
Description: | thioredoxin domain containing 17 [Source:HGNC Symbol;Acc:28218] |
Percent Identity: | 78.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MAIYEEVSVSGFEEFNQAVKQHLGKTI-FAYFTGSKDAEGKSWCPDCVQAEPVVREGL-KHVSKECVFIH |
MAI..E.S..GFEEFNQAVKQHLGKTI.FAYFTGSKD.EGKSWCP.CVQAEPV..EGL.KH.S.E..FIH | |
Retrocopy | MAIFKEGSMLGFEEFNQAVKQHLGKTI<FAYFTGSKDTEGKSWCPKCVQAEPVI*EGL>KHISIEYMFIH |
Parental | CQVGE-KPYWKDPNNDFRKQLKVTAVPTLIKYGT-PQKLVESECLQANLVEMLFSED |
CQVGE.K.Y.KD.NND.RKQLKVTAVPTL.K.GT..QKLV.SEC.QANLV.MLFSED | |
Retrocopy | CQVGE>KSY*KDSNNDLRKQLKVTAVPTLLKCGT<LQKLV*SECFQANLVVMLFSED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |