Parental gene:

HSPA9, ENSPTRG00000017290

Aliases:HSPA9, HSPA9B
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:139269751..139290756(-)


>ENSPTRG00000017290
ATGATAAGTGCCAGCCGAGCTGCAGCAGCCCGTCTCGTGGGCGCCGCAGCCTCCCGGGGCCCTACGGCCGCCCGCCACCA
GGATAGCTGGAATGGCCTTAGTCATGAGGCTTTTAGAATTGTTTCAAGGCGGGATTATGCATCAGAAGCAATCAAGGGAG
CAGTTGTTGGTATTGATTTGGGTACTACCAACTCCTGCGTGGCAGTTATGGAAGGTAAACAAGCAAAGGTGCTGGAGAAT
GCCGAAGGTGCCAGAACCACCCCTTCAGTTGTGGCCTTTACAGCAGATGGTGAGCGACTTGTTGGAATGCCGGCCAAGCG
ACAGGCTGTCACCAACCCAAACAATACATTTTATGCTACCAAGCGTCTCATTGGCCGGCGATATGATGATCCTGAAGTAC
AGAAAGACATTAAAAATGTTCCCTTTAAAATTGTCCGTGCCTCCAATGGTGATGCCTGGGTTGAGGCTCATGGGAAATTG
TACTCTCCGAGTCAGATTGGAGCATTTGTGTTGATGAAGATGAAAGAGACTGCAGAAAATTACTTGGGGCACACAGCAAA
AAATGCTGTGATCACAGTCCCAGCTTATTTCAATGACTCGCAGAGACAGGCCACTAAAGATGCTGGCCAGATATCTGGAC
TGAATGTGCTTCGGGTGATTAATGAGCCCACAGCTGCTGCTCTTGCCTATGGTCTAGACAAATCAGAAGACAAAGTCATT
GCTGTATATGATTTAGGTGGTGGAACTTTTGATATTTCTATCCTGGAAATTCAGAAAGGAGTATTTGAGGTGAAATCCAC
AAATGGGGATACCTTCTTAGGTGGGGAAGACTTTGACCAGGCCTTGCTACGGCACATTGTGAAGGAGTTCAAGAGAGAGA
CAGGGGTTGATTTGACTAAAGACAACATGGCACTTCAGAGGGTACGGGAAGCTGCTGAAAAGGCTAAATGTGAACTCTCC
TCATCTGTGCAGACTGACATCAATTTGCCCTATCTTACAATGGATTCTTCTGGACCCAAGCATTTGAATATGAAGTTGAC
CCGTGCTCAATTTGAAGGGATTGTCACTGATCTAATCAGAAGGACTATCGCTCCATGCCAAAAAGCTATGCAAGATGCAG
AAGTCAGCAAGAGTGACATAGGAGAAGTGATTCTTGTGGGTGGCATGACTAGGATGCCCAAGGTTCAGCAGACTGTACAG
GATCTTTTTGGCAGAGCCCCAAGTAAAGCTGTCAATCCTGATGAGGCTGTGGCCATTGGAGCTGCCATTCAGGGAGGTGT
GTTGGCCGGCGATGTCACGGATGTGCTGCTCCTTGATGTCACTCCCCTGTCTCTGGGTATTGAAACTCTAGGAGGTGTCT
TTACCAAACTTATTAATAGGAATACCACTATTCCAACCAAGAAGAGCCAGGTATTCTCTACTGCCGCTGATGGTCAAACG
CAAGTGGAAATTAAAGTGTGTCAGGGTGAAAGAGAGATGGCTGGAGACAACAAACTCCTTGGACAGTTTACTTTGATTGG
AATTCCACCAGCCCCTCGTGGAGTTCCTCAGATTGAAGTTACATTTGACATTGATGCCAATGGGATAGTACATGTTTCTG
CTAAAGATAAAGGCACAGGACGTGAGCAGCAGATTGTAATCCAGTCTTCTGGTGGATTAAGCAAAGATGATATTGAAAAT
ATGGTTAAAAATGCAGAGAAATATGCTGAAGAAGACCGGCGAAAGAAGGAACGAGTTGAAGCAGTTAATATGGCTGAAGG
AATCATTCACGACACAGAAACCAAGATGGAAGAATTCAAGGACCAATTACCTGCTGATGAGTGCAACAAGCTGAAAGAAG
AGATTTCCAAAATGAGGGAGCTCCTGGCTAGAAAAGACAGCGAAACAGGAGAAAATATTAGACAGGCAGCATCCTCTCTT
CAGCAGGCATCATTGAAGCTGTTCGAAATGGCATACAAAAAGATGGCATCTGAGCGAGAAGGCTCTGGAAGTTCTGGCAC
TGGGGAACAAAAGGAAGATCAAAAGGAGGAAAAACAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 122 .10 RPM
SRP007412_cerebellum 166 .70 RPM
SRP007412_heart 254 .13 RPM
SRP007412_kidney 257 .33 RPM
SRP007412_liver 306 .23 RPM
SRP007412_testis 94 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013579 ortholog_one2one 2 retrogenes
retro_chof_2539, retro_chof_293,
Homo sapiens ENSG00000113013 ortholog_one2one 1 retrogene
retro_hsap_2214,
Gorilla gorilla ENSGGOG00000014154 ortholog_one2one 1 retrogene
retro_ggor_1747,
Mus musculus ENSMUSG00000024359 ortholog_one2one 1 retrogene
retro_mmus_3624,
Pan troglodytes ENSPTRG00000000563 within_species_paralog 1 retrogene
retro_ptro_2033,
Pan troglodytes ENSPTRG00000004404 within_species_paralog 5 retrogenes
retro_ptro_1743, retro_ptro_2507, retro_ptro_272, retro_ptro_3259, retro_ptro_3264,
Rattus norvegicus ENSRNOG00000019525 ortholog_one2one 1 retrogene
retro_rnor_1797,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1680 92.46 81.00
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Download FASTA sequences of all ENSPTRG00000017290 retrocopies