RetrogeneDB ID: | retro_hsap_2214 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:222826838..222828484(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226666 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPA9 | ||
Ensembl ID: | ENSG00000113013 | ||
Aliases: | HSPA9, CSA, GRP-75, GRP75, HEL-S-124m, HSPA9B, MOT, MOT2, MTHSP75, PBP74 | ||
Description: | heat shock 70kDa protein 9 (mortalin) [Source:HGNC Symbol;Acc:5244] |
Percent Identity: | 93.68 % |
Parental protein coverage: | 80.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | PEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDS |
PEVQKDIKN.PFKIV.ASNGDAWVEAHGKLYSPSQIGAFV.MKMKETAENYLGHTAKNAVI.VPAYFND. | |
Retrocopy | PEVQKDIKNIPFKIVCASNGDAWVEAHGKLYSPSQIGAFVSMKMKETAENYLGHTAKNAVIAVPAYFNDL |
Parental | QRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSEDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGD |
QRQATKDAGQISGLNVLRVINEPTAAALAYGLDKS.DKVIAVYDLGGGTFDISILE.QKGVFEVKSTNGD | |
Retrocopy | QRQATKDAGQISGLNVLRVINEPTAAALAYGLDKSKDKVIAVYDLGGGTFDISILEFQKGVFEVKSTNGD |
Parental | TFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDSSGPK |
TFLGGEDFDQALL.HIVKEFKRETGVDLTKDN.A.QRV.EAAEKAKCELSSSVQTDINLPYLTMDSSGPK | |
Retrocopy | TFLGGEDFDQALLQHIVKEFKRETGVDLTKDNVAFQRVWEAAEKAKCELSSSVQTDINLPYLTMDSSGPK |
Parental | HLNMKLTRAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPK-VQQTVQD-LFGRA-P |
HLN.KLT.AQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPK.VQQTVQD..FGRA.P | |
Retrocopy | HLNTKLTHAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPK<VQQTVQD>FFGRA>P |
Parental | SKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAAD |
SKAVNPDEAVAIGAAIQG.VLAGDVTDVLLLDV.PLSLGIETL.GVFTKLINRNTTIPTKKSQVFSTAAD | |
Retrocopy | SKAVNPDEAVAIGAAIQGDVLAGDVTDVLLLDVIPLSLGIETLRGVFTKLINRNTTIPTKKSQVFSTAAD |
Parental | GQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVI |
GQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQI.VTFDIDANGI.HVSAKDKGTG.EQQIVI | |
Retrocopy | GQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIKVTFDIDANGIIHVSAKDKGTGHEQQIVI |
Parental | QSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKMEEFKDQLPADE-CNKLKEEIS |
QSSGGLSKDD.ENMVKNAEKYA.ED.R.KE.VEAVNMAEGIIHDTETKMEEFKDQLPAD..CNKLKEEIS | |
Retrocopy | QSSGGLSKDDVENMVKNAEKYAKEDQRRKE*VEAVNMAEGIIHDTETKMEEFKDQLPADS<CNKLKEEIS |
Parental | KMRELLAR-KDSETGENIRQAASSLQQASLKLFEMAYKKMASEREGSGSSGTGEQKEDQKEEKQ |
K.RELLA..KDSETGENIRQAASSLQQASLKLF.MAYKKMA.EREGSGSSGTGEQKEDQKEEKQ | |
Retrocopy | KVRELLAK<KDSETGENIRQAASSLQQASLKLFKMAYKKMATEREGSGSSGTGEQKEDQKEEKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 176 .75 RPM |
bodymap2_adrenal | 0 .02 RPM | 228 .54 RPM |
bodymap2_brain | 0 .05 RPM | 307 .79 RPM |
bodymap2_breast | 0 .00 RPM | 197 .57 RPM |
bodymap2_colon | 0 .00 RPM | 210 .24 RPM |
bodymap2_heart | 0 .02 RPM | 296 .32 RPM |
bodymap2_kidney | 0 .00 RPM | 373 .99 RPM |
bodymap2_liver | 0 .06 RPM | 339 .92 RPM |
bodymap2_lung | 0 .00 RPM | 170 .25 RPM |
bodymap2_lymph_node | 0 .00 RPM | 157 .63 RPM |
bodymap2_ovary | 0 .02 RPM | 339 .81 RPM |
bodymap2_prostate | 0 .00 RPM | 205 .62 RPM |
bodymap2_skeletal_muscle | 0 .11 RPM | 413 .74 RPM |
bodymap2_testis | 0 .04 RPM | 235 .61 RPM |
bodymap2_thyroid | 0 .04 RPM | 526 .16 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 164 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1680 |
Gorilla gorilla | retro_ggor_1747 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013579 | 2 retrocopies | |
Homo sapiens | ENSG00000044574 | 1 retrocopy | |
Homo sapiens | ENSG00000109971 | 8 retrocopies | |
Homo sapiens | ENSG00000113013 | 1 retrocopy |
retro_hsap_2214 ,
|
Gorilla gorilla | ENSGGOG00000014154 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024359 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017290 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019525 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .13 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .11 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .05 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .07 RPM |
YRI_NA19223 | 0 .06 RPM |