Parental gene:

HDAC1, ENSPVAG00000013325

Aliases:None
Description:histone deacetylase 1 [Source:HGNC Symbol;Acc:4852]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1583:337399..361574(+)


>ENSPVAG00000013325
ATGGCGCAGACTCAGGGCACCAGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTACTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTACTTAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCACAGTGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCTGAGTACAGCAAGCAAATGCAGAGATTCAATGTTGGTGAGGACTGTCCGGTATTTGATGGCCTGTT
TGAATTCTGTCAGTTATCTACTGGTGGCTCTGTGGCAAGTGCTGTGAAGCTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTATGTCAATGATATCGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCACGGCGATGGCGTGGAAGAGGCCTT
CTATACCACAGACCGGGTCATGACTGTGTCCTTTCATAAATATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TTGGAGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATTGATGACGAGTCCTACGAGGCCATT
TTCAAGCCGGTCATATCCAAAGTAATGGAGATGTTCCAGCCCAGTGCAGTCGTCTTACAGTGTGGCTCTGACTCCCTATC
TGGGGATCGGTTAGGTTGCTTCAATCTGACCATCAAAGGGCATGCCAAGTGTGTGGAATTTGTGAAGAGCTTTAACCTGC
CTATGCTGATGCTGGGAGGAGGTGGCTACACCATTCGTAATGTTGCCCGGTGCTGGACTTATGAAACAGCTGTAGCCCTG
GACACAGAGATCCCTAATGAGCTTCCATACAACGACTACTTCGAATACTTTGGACCAGATTTCAAACTTCACATCAGTCC
TTCTAATATGACTAACCAAAACACGAATGAGTACTTGGAGAAGATCAAACAGCGACTATTTGAGAACCTGAGAATGCTGC
CCCACGCACCTGGGGTTCAAATGCAGGCGATTCCTGAGGATGCCATTCCAGAGGAGAGTGGTGATGAAGATGAAGAAGAC
CCTGACAAACGCATCTCGATCTGTTCTTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCTGACTCTGATGAGGAAGG
AGAAGGTGGTCGTAAGAACTCTTCCAACTTCAAAAAAGCGAAGAGAGTCAAAACAGAGGATGAAAAAGAGAAAGAGCCAG
AAGAGAAGAAAGAAATCACAGAAGAAGAGAAAACCAAGGAAGACAAGCAAGAAGCCAAAGGGGTCAAGGAGGAGGTCAAG
TTGGCCTGA

Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Callithrix jacchus ENSCJAG00000000970 ortholog_one2one 2 retrogenes
retro_cjac_2490, retro_cjac_830,
Homo sapiens ENSG00000116478 ortholog_one2one 1 retrogene
retro_hsap_826,
Gorilla gorilla ENSGGOG00000011741 ortholog_one2one 1 retrogene
retro_ggor_676,
Myotis lucifugus ENSMLUG00000013837 ortholog_one2many 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000009948 ortholog_one2one 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Mus musculus ENSMUSG00000028800 possible_ortholog 1 retrogene
retro_mmus_153,
Nomascus leucogenys ENSNLEG00000002473 ortholog_one2one 1 retrogene
retro_nleu_259,
Pelodiscus sinensis ENSPSIG00000004134 ortholog_one2one 1 retrogene
retro_psin_44,
Rattus norvegicus ENSRNOG00000009568 possible_ortholog 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sarcophilus harrisii ENSSHAG00000008787 possible_ortholog 1 retrogene
retro_shar_573,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_1339 68.35 64.11
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Download FASTA sequences of all ENSPVAG00000013325 retrocopies