Parental gene:

Hdac1, ENSMUSG00000028800

Aliases:Hdac1, HD1, Hdac1-ps, MommeD5, RPD3
Description:histone deacetylase 1 [Source:MGI Symbol;Acc:MGI:108086]
Organism:Mouse (Mus musculus)
Coordinates:4:129516103..129542713(-)


>ENSMUSG00000028800
ATGGCGCAGACTCAGGGCACCAAGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAACTACTATTATGGACAAGG
GCACCCCATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTGCTCAACTATGGTCTCTACCGAAAAATGGAGATCT
ACCGTCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCACAGTGATGACTACATTAAATTCCTGCGTTCTATTCGC
CCAGATAATATGTCTGAATACAGCAAGCAGATGCAGAGATTCAATGTTGGTGAGGACTGTCCGGTGTTTGATGGCTTGTT
TGAGTTCTGTCAGTTGTCCACGGGAGGCTCTGTCGCAAGTGCTGTGAAGCTTAATAAGCAGCAGACGGACATCGCTGTGA
ACTGGGCCGGGGGCCTGCACCATGCAAAGAAGTCTGAAGCTTCTGGCTTCTGTTACGTCAATGACATCGTCCTGGCCATC
CTGGAACTGCTAAAGTACCACCAGAGGGTGCTCTATATTGACATTGATATTCACCATGGCGATGGCGTGGAAGAGGCCTT
CTATACTACAGACCGGGTCATGACTGTGTCCTTTCATAAATACGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGACA
TTGGGGCTGGCAAAGGCAAGTACTATGCTGTGAACTACCCACTGCGAGACGGCATTGACGACGAATCCTATGAAGCCATC
TTTAAGCCAGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCAGTGGTCTTACAGTGTGGCTCAGATTCCCTGTC
TGGGGACCGGTTAGGTTGCTTCAATCTGACCATCAAAGGACACGCCAAGTGTGTGGAGTTCGTGAAGAGTTTCAACTTGC
CCATGCTGATGCTGGGAGGAGGTGGCTACACCATCCGGAATGTTGCTCGCTGCTGGACTTACGAAACAGCGGTGGCCCTG
GACACAGAGATCCCTAATGAGCTGCCCTACAACGACTACTTTGAATACTTTGGACCGGATTTCAAGCTTCACATCAGCCC
TTCCAACATGACCAACCAGAACACTAACGAGTACCTGGAGAAGATCAAGCAGCGTCTCTTTGAGAACTTGAGGATGCTGC
CCCATGCCCCTGGGGTCCAGATGCAGGCCATCCCTGAGGATGCCATCCCCGAAGAGAGTGGGGATGAAGATGAGGAGGAC
CCTGACAAACGCATCTCCATCTGCTCCTCTGACAAACGCATTGCCTGTGAGGAAGAGTTCTCGGACTCAGATGAGGAGGG
AGAAGGTGGTCGCAAGAACTCTTCTAACTTCAAAAAAGCCAAAAGAGTTAAAACAGAGGATGAGAAAGAGAAAGATCCTG
AAGAGAAAAAAGAAGTCACAGAAGAAGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAAGAAGAGGTCAAG
TTGGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain 13 .78 RPM
SRP007412_cerebellum 12 .42 RPM
SRP007412_heart 11 .83 RPM
SRP007412_kidney 19 .44 RPM
SRP007412_liver 12 .59 RPM
SRP007412_testis 57 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Callithrix jacchus ENSCJAG00000000970 possible_ortholog 2 retrogenes
retro_cjac_2490, retro_cjac_830,
Homo sapiens ENSG00000116478 possible_ortholog 1 retrogene
retro_hsap_826,
Gorilla gorilla ENSGGOG00000011741 possible_ortholog 1 retrogene
retro_ggor_676,
Myotis lucifugus ENSMLUG00000013837 possible_ortholog 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000009948 possible_ortholog 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Nomascus leucogenys ENSNLEG00000002473 possible_ortholog 1 retrogene
retro_nleu_259,
Otolemur garnettii ENSOGAG00000005709 ortholog_one2many 3 retrogenes
retro_ogar_2181, retro_ogar_3022, retro_ogar_3313,
Pelodiscus sinensis ENSPSIG00000004134 ortholog_one2many 1 retrogene
retro_psin_44,
Pteropus vampyrus ENSPVAG00000013325 possible_ortholog 1 retrogene
retro_pvam_1339,
Rattus norvegicus ENSRNOG00000009568 ortholog_many2many 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sarcophilus harrisii ENSSHAG00000008787 possible_ortholog 1 retrogene
retro_shar_573,
Tursiops truncatus ENSTTRG00000001613 ortholog_one2many 1 retrogene
retro_ttru_1236,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_153 99.38 100.00
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Download FASTA sequences of all ENSMUSG00000028800 retrocopies