Parental gene:

CIN.21501, ENSCING00000002649

Aliases:None
Description:Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F6YDI9]
Organism:Vase tunicate (Ciona intestinalis)
Coordinates:1:1063005..1084783(-)


>ENSCING00000002649
ATGGCGTTATCCAACCCTGGAGGCAGTCGAAAAGTCTGCTATTATTATGACTCTGATATTGGTAACAACTACTATGGTCA
AGGCCACCCAATGAAACCACACAGAATTCGCATGACACACAATCTCCTTCTTAATTATGGATTGTACAGAAAGATGGAGA
TCTATCGTCCCCATAAATGCAATGCTGAAGAGATGTCACGATACCACAGCGATGATTACATTAAGTTCCTGAGAAGCATT
CGTCCAGATAACATGTCAGAATACACAAAACAAATGCAGCGATTTAATGTGGGTGAGGATTGCCCAGTGTTTGATGGCTT
GTATGAATTCTGTCAATTATCTGGTGGGGGATCCATAGCTGGTGCAGTTAAGATAAACAAACACCAAACAGACATTGCAA
TCAACTGGGCAGGCGGGCTTCATCATGCAAAGAAATCTGAAGCATCTGGATTCTGTTACGTTAATGATATTGTTCTGGCT
ATCCTGGAACTACTAAAGTACCACCAGCGTGTCTTGTACATTGACATTGACATCCACCATGGAGATGGGGTAGAAGAAGC
CTTCTATACCACAGATCGTGTCATGACGGTTTCATTTCATAAATATGGAGAATATTTCCCAGGCACTGGAGATCTAAGGG
ATATAGGGGCAGGGAAAGGCAAATATTATGCTCTTAACTTCCCACTAAGAGATGGAATGGATGATGAATGTTATGAACAA
ATCTTTCAACCAGTGATAACTAAGGTGATGGAATATTACCAGCCAAGTGCTGTTGTACTTCAGTGTGGGGCAGATTCATT
GGGGGATAGGCTTGGTTGTTTCAACCTTACAGTTAAAGGGCATGCTAAGTGTCTTGAGTACGTGAAGAAATTCAACGTCC
CAATCTTAATGTTGGGTGGAGGTGGTTACACCATTCGTAACGTAGCTAGATGTTGGACATATGAGACTGCTGTGGCTCTG
GGGCAGGAAATTCCAAACGAGCTTCCCTACAATGATTACTTTGAATACTTTGGACCAGACTTCAAGCTTCATATCAGTCC
AAGCAACATGAGCAACCAAAACACGATGGAATATTTGCAGAAGATCCGACAACGATTGTTTGAAAACCTTCGAATGTTGC
CTCATGCACCTGGCGTGCAAATGCAAGATATCCCACCAGATGCTGTTGTATCAGGAAGCGATGATGAAGCAATGGATGAT
CCGGATAAGAAG

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000970 ortholog_one2many 2 retrogenes
retro_cjac_2490, retro_cjac_830,
Echinops telfairi ENSETEG00000008468 ortholog_one2many 1 retrogene
retro_etel_488,
Homo sapiens ENSG00000116478 ortholog_one2many 1 retrogene
retro_hsap_826,
Gorilla gorilla ENSGGOG00000011741 ortholog_one2many 1 retrogene
retro_ggor_676,
Myotis lucifugus ENSMLUG00000003117 ortholog_one2many 4 retrogenes
retro_mluc_1570, retro_mluc_225, retro_mluc_2548, retro_mluc_935,
Myotis lucifugus ENSMLUG00000013837 ortholog_one2many 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000009948 ortholog_one2many 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Monodelphis domestica ENSMODG00000017860 ortholog_one2many 1 retrogene
retro_mdom_597,
Mus musculus ENSMUSG00000028800 ortholog_one2many 1 retrogene
retro_mmus_153,
Nomascus leucogenys ENSNLEG00000002473 ortholog_one2many 1 retrogene
retro_nleu_259,
Ornithorhynchus anatinus ENSOANG00000003631 ortholog_one2many 1 retrogene
retro_oana_79,
Otolemur garnettii ENSOGAG00000005709 ortholog_one2many 3 retrogenes
retro_ogar_2181, retro_ogar_3022, retro_ogar_3313,
Pelodiscus sinensis ENSPSIG00000004134 ortholog_one2many 1 retrogene
retro_psin_44,
Pan troglodytes ENSPTRG00000018519 ortholog_one2many 1 retrogene
retro_ptro_69,
Pteropus vampyrus ENSPVAG00000013325 ortholog_one2many 1 retrogene
retro_pvam_1339,
Rattus norvegicus ENSRNOG00000009568 ortholog_one2many 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sorex araneus ENSSARG00000000354 ortholog_one2many 1 retrogene
retro_sara_651,
Sarcophilus harrisii ENSSHAG00000008787 ortholog_one2many 1 retrogene
retro_shar_573,
Ictidomys tridecemlineatus ENSSTOG00000012779 ortholog_one2many 1 retrogene
retro_itri_374,
Tarsius syrichta ENSTSYG00000009363 ortholog_one2one 4 retrogenes
retro_tsyr_1337, retro_tsyr_1355, retro_tsyr_681, retro_tsyr_765,
Tursiops truncatus ENSTTRG00000001613 ortholog_one2many 1 retrogene
retro_ttru_1236,
Tursiops truncatus ENSTTRG00000015043 ortholog_one2many 1 retrogene
retro_ttru_462,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cint_18 59.19 97.52
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Download FASTA sequences of all ENSCING00000002649 retrocopies