Parental gene:

Tubb4b, ENSRNOG00000010170

Aliases:Tubb4b, Tubb2, Tubb2c
Description:tubulin beta-4B chain [Source:RefSeq peptide;Acc:NP_954525]
Organism:Rat (Rattus norvegicus)
Coordinates:3:2422871..2425633(-)


>ENSRNOG00000010170
ATGAGGGAGATCGTGCACCTGCAGGCTGGGCAGTGCGGCAACCAGATTGGCGCCAAGTTCTGGGAGGTAATCAGCGACGA
GCATGGCATTGATCCCACTGGCACGTACCACGGAGATAGCGACCTCCAGCTGGAGCGCATCAACGTGTACTACAACGAGG
CCACCGGTGGCAAGTATGTGCCCCGCGCTGTGCTCGTGGACTTGGAGCCCGGCACCATGGACTCGGTGCGCTCAGGGCCC
TTCGGGCAGATCTTCAGACCTGATAACTTCGTTTTTGGTCAGAGTGGGGCTGGGAACAACTGGGCCAAGGGGCACTACAC
AGAAGGTGCAGAGCTGGTTGACTCGGTGTTGGACGTTGTGAGGAAGGAAGCTGAGAGCTGTGACTGCCTGCAAGGCTTCC
AGCTGACCCACTCCCTGGGTGGGGGGACTGGGTCTGGGATGGGTACCCTCCTTATCAGCAAGATCCGGGAGGAGTACCCA
GACAGAATCATGAACACCTTCAGTGTGGTCCCTTCCCCCAAGGTGTCGGACACAGTGGTTGAGCCCTACAATGCCACCCT
TTCAGTCCACCAGCTTGTTGAAAACACAGATGAGACCTATTGTATTGATAATGAAGCACTCTATGACATCTGCTTCAGAA
CCCTAAAGCTGACCACACCCACTTATGGTGACCTGAACCATCTAGTGTCCGCCACCATGAGTGGGGTAACCACTTGCCTA
CGATTCCCTGGCCAGCTAAATGCTGACCTGCGGAAACTGGCTGTAAATATGGTGCCCTTCCCTCGCCTGCACTTCTTCAT
GCCTGGCTTTGCCCCCTTGACCAGCCGGGGAAGCCAGCAGTACCGAGCCCTGACAGTTCCTGAGCTCACCCAGCAGATGT
TTGATGCTAAGAACATGATGGCTGCCTGTGATCCCCGCCATGGGCGCTACTTGACAGTGGCTGCCGTGTTCAGGGGCCGC
ATGTCTATGAAGGAGGTGGACGAACAGATGCTTAATGTCCAAAACAAGAACAGCAGCTACTTTGTTGAGTGGATCCCCAA
CAACGTGAAAACAGCTGTCTGTGACATTCCACCTCGGGGCCTAAAAATGTCCGCCACCTTCATTGGCAACAGCACGGCTA
TTCAGGAGCTGTTCAAACGCATCTCAGAGCAGTTCACAGCCATGTTCCGACGCAAGGCCTTCCTACACTGGTACACGGGC
GAGGGCATGGATGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAATGACCTGGTGTCCGAGTACCAGCAGTACCAGGA
TGCTACAGCTGAGGAGGAAGGAGAGTTTGAGGAGGAGGCTGAGGAGGAGGTGGCTTAG

Library Parental gene expression (RPM)
SRP017611_brain 232 .51 RPM
SRP017611_kidney 84 .99 RPM
SRP017611_liver 62 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000011966 ortholog_one2one 1 retrogene
retro_cpor_497,
Microcebus murinus ENSMICG00000010939 ortholog_one2one 1 retrogene
retro_mmur_792,
Macaca mulatta ENSMMUG00000012164 ortholog_one2one 2 retrogenes
retro_mmul_1849, retro_mmul_2533,
Monodelphis domestica ENSMODG00000017213 ortholog_one2one 1 retrogene
retro_mdom_117,
Mus musculus ENSMUSG00000036752 ortholog_one2one 2 retrogenes
retro_mmus_158, retro_mmus_422,
Otolemur garnettii ENSOGAG00000005927 ortholog_one2one 2 retrogenes
retro_ogar_3410, retro_ogar_3450,
Pan troglodytes ENSPTRG00000023373 ortholog_one2one 2 retrogenes
retro_ptro_2403, retro_ptro_3166,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_742 83.91 51.01
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2. retro_rnor_867 91.43 70.34
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Download FASTA sequences of all ENSRNOG00000010170 retrocopies