Parental gene:

Snap23, ENSRNOG00000050552

Aliases:None
Description:synaptosomal-associated protein 23 [Source:MGI Symbol;Acc:MGI:109356]
Organism:Rat (Rattus norvegicus)
Coordinates:3:118893522..118908112(+)


>ENSRNOG00000050552
ATGGATGATCTATCACCAGAAGAAATTCAGCTTCGGGCTCACCAAGTTACTGATGAGTCTCTGGAAAGCACAAGGAGAAT
CCTGGGTTTAGCCATTGAGTCTCAGGATGCAGGAATCAAGACTATCACTATGCTGGATGAGCAAGGGGAACAACTAAATC
GCATAGAAGAAGGCATGGACCAAATAAATAAAGACATGAGAGAGGCAGAGAAGACTTTAACAGAACTCAACAAGTGTTGT
GGCCTCTGCGTCTGCCCTTGTAATAGGACCAAGAACTTTGAGTCTGGAAAGAACTATAAGGCAACATGGGGTGATGGTGG
AGACAGCTCACCTAGCAATGTGGTATCTAAGCAACCAAGCCGGATAACAAATGGTCAGCCTCAGCAGACTACAGGAGCGG
CCAGCGGTGGATACATTAAACGGTACACCAGCTCTTCGAAAGAAAATGATGGCAGCAAGAATATGGTGACAGAAGGGAGT
ATAGAAGGAAACAACAAGAATATGGTGACAGTTATTTTTCACGTGTGGCAGGCAATGTCTCAACAGGTAAAGGAGCTTGC
TGCCAAGGCTGACACCAACAAGAATCGCATTGACATTGCCAATACAAGAGCAAAGAAACTCATTGACAGCTAA

Library Parental gene expression (RPM)
SRP017611_liver 4 .84 RPM
SRP017611_kidney 16 .75 RPM
SRP017611_brain 2 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015685 ortholog_one2many 1 retrogene
retro_acar_38,
Ailuropoda melanoleuca ENSAMEG00000015774 ortholog_one2one 1 retrogene
retro_amel_206,
Bos taurus ENSBTAG00000005661 ortholog_one2one 2 retrogenes
retro_btau_1622, retro_btau_371,
Canis familiaris ENSCAFG00000011105 ortholog_one2one 2 retrogenes
retro_cfam_1073, retro_cfam_1780,
Choloepus hoffmanni ENSCHOG00000006468 ortholog_one2many 3 retrogenes
retro_chof_1, retro_chof_1652, retro_chof_1784,
Cavia porcellus ENSCPOG00000003638 ortholog_one2one 1 retrogene
retro_cpor_862,
Felis catus ENSFCAG00000013387 ortholog_one2one 1 retrogene
retro_fcat_1114,
Loxodonta africana ENSLAFG00000005462 ortholog_one2one 1 retrogene
retro_lafr_839,
Microcebus murinus ENSMICG00000000813 ortholog_one2one 2 retrogenes
retro_mmur_1188, retro_mmur_377,
Monodelphis domestica ENSMODG00000017889 ortholog_one2one 1 retrogene
retro_mdom_1772,
Mustela putorius furo ENSMPUG00000009856 ortholog_one2one 3 retrogenes
retro_mputfur_1181, retro_mputfur_692, retro_mputfur_915,
Mus musculus ENSMUSG00000027287 ortholog_one2one 1 retrogene
retro_mmus_2570,
Tarsius syrichta ENSTSYG00000006589 ortholog_one2one 2 retrogenes
retro_tsyr_1020, retro_tsyr_715,
Tursiops truncatus ENSTTRG00000002561 ortholog_one2one 1 retrogene
retro_ttru_658,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1505 68.57 66.19
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2. retro_rnor_2389 56.88 51.90
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Download FASTA sequences of all ENSRNOG00000050552 retrocopies