RetrogeneDB ID: | retro_amel_206 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192353.1:1611913..1612333(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNAP23 | ||
Ensembl ID: | ENSAMEG00000015774 | ||
Aliases: | None | ||
Description: | synaptosomal-associated protein, 23kDa [Source:HGNC Symbol;Acc:11131] |
Percent Identity: | 65. % |
Parental protein coverage: | 66.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MDNLSSEEIQLRAHQVTDESLESTRRILGLALESQDAGIKTITMLDEQGEQLNRIEEGMDQINKDMREAE |
M...SSEEIQLRAHQV.D.SLE..RRILGL..ESQD...KT.TMLDE.G.Q.N.I.E.MDQ...D.REAE | |
Retrocopy | MNHPSSEEIQLRAHQVMDGSLENSRRILGLTIESQDVRVKTNTMLDE*GVQINHIQEDMDQVSRDVREAE |
Parental | KTLTELNKCCGLCVCPCNRTKNFESGKAYKSTWGDGGDNSPSDVVAKQPGRVTNGQPQQPATGAASGGYI |
K.L..LN.CCGLCVCPCN..K..E.GKA.K.T..DG.DNS.S.V..KQPG.VTNGQPQQ....A..G.YI | |
Retrocopy | KMLAGLNGCCGLCVCPCNKIKKIEAGKAHKAT*RDGRDNSSSSVISKQPGHVTNGQPQQTTIRAINGRYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000015685 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000015774 | 1 retrocopy |
retro_amel_206 ,
|
Bos taurus | ENSBTAG00000005661 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011105 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000006468 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000003638 | 1 retrocopy | |
Felis catus | ENSFCAG00000013387 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005462 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000813 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000017889 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009856 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027287 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050552 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006589 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000002561 | 1 retrocopy |