Parental gene:

UBE2E2, ENSSSCG00000011209

Aliases:None
Description:ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478]
Organism:Pig (Sus scrofa)
Coordinates:13:11688025..11779399(+)


>ENSSSCG00000011209
ATGTCTTATTTCAGTGCTGGACCCAAAGGAGACAACATTTATGAATGGAGGTCAACTATATTGGGACCCCCAGGATCTGT
CTATGAAGGAGGGGTGTTCTTTCTTGACATTACCTTTTCACCAGACTATCCGTTTAAACCCCCTAAGGTTACCTTCCGAA
CAAGAATCTATCACTGTAATATTAACAGCCAAGGCGTGATCTGTCTGGACATACTGAAGGACAACTGGAGTCCAGCCCTC
ACCATCTCAAAAGTTCTCCTCTCCATCTGCTCACTTCTTACAGACTGCAATCCTGCTGACCCGCTGGTGGGCAGCATCGC
CACACAGTACATGACCAACAGGGCGGAGCACGACCGGATGGCCAGACAGTGGACCAAGCGGTACGCCACATAG

Library Parental gene expression (RPM)
SRP014902_placenta 16 .46 RPM
SRP014902_testis 16 .55 RPM
SRP018856_adipose 6 .88 RPM
SRP018288_kidney 8 .96 RPM
SRP018288_lung 17 .51 RPM
SRP018288_liver 9 .43 RPM
SRP018288_heart 17 .05 RPM
SRP035408_liver 5 .72 RPM
SRP035408_brain 22 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000006860 ortholog_one2many 1 retrogene
retro_cint_33,
Sus scrofa ENSSSCG00000016722 other_paralog 2 retrogenes
retro_sscr_671, retro_sscr_79,
Sus scrofa ENSSSCG00000024306 other_paralog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 other_paralog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_759 89.19 87.30
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2. retro_sscr_961 71.05 88.10
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Download FASTA sequences of all ENSSSCG00000011209 retrocopies