RetrogeneDB ID: | retro_sscr_759 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 4:100643110..100643441(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E2 | ||
Ensembl ID: | ENSSSCG00000011209 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478] |
Percent Identity: | 89.19 % |
Parental protein coverage: | 87.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LGPPGSVYEGGVFF-LDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSI |
LGPPGSVYEG.VFF.LDITFS.D.PFKPPKVTF.TRIYHCNINSQGVICLD.LKDNWSPALTISKV.LSI | |
Retrocopy | LGPPGSVYEGDVFF>LDITFSSDHPFKPPKVTFCTRIYHCNINSQGVICLDVLKDNWSPALTISKVFLSI |
Parental | CSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT |
CSLLT.CNP.DPLVGSIATQY.TNRAEHDR.ARQWTK.YAT | |
Retrocopy | CSLLTGCNPVDPLVGSIATQYLTNRAEHDRIARQWTKKYAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 16 .46 RPM |
SRP014902_testis | 0 .42 RPM | 16 .55 RPM |
SRP018288_heart | 0 .10 RPM | 17 .05 RPM |
SRP018288_kidney | 0 .00 RPM | 8 .96 RPM |
SRP018288_liver | 0 .00 RPM | 9 .43 RPM |
SRP018288_lung | 0 .00 RPM | 17 .51 RPM |
SRP018856_adipose | 0 .02 RPM | 6 .88 RPM |
SRP035408_brain | 1 .94 RPM | 22 .93 RPM |
SRP035408_liver | 0 .41 RPM | 5 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000006860 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011209 | 2 retrocopies |
retro_sscr_759 , retro_sscr_961,
|
Sus scrofa | ENSSSCG00000016722 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000024306 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029822 | 4 retrocopies |