Parental gene: | RNF130, ENSSSCG00000014013 |
| Aliases: | None |
| Description: | ring finger protein 130 [Source:HGNC Symbol;Acc:18280] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 2:80139477..80199924(+) |
>ENSSSCG00000014013
CAGGCACTGGAGATATTATTGCTGTCATGATTACAGAATTGAGGGGTAAAGATATTTTGAGTTATCTGGAGAAAAACATC
TCTGTTCAAATGACAATAGCTGTTGGAACTCGAATGCCGCCAAAGAACTTCAGCCGTGGCTCTCTAGTCTTCGTGTCAAT
ATCCTTTATTGTTTTGATGATTATTTCTTCAGCATGGCTTATATTCTACTTCATTCAGAAGATCAGATACACAAATGCCC
GGGACAGAAACCAGCGTCGTCTTGGAGATGCAGCCAAGAAAGCCATCAGCAAATTGACAACCAGAACAGTCAAAAAGGGT
GATAAGGAAACAGACCCAGACTTTGATCACTGTGCAGTCTGCATAGAGAGCTATAAGCAGAATGATGTTGTCCGGATTCT
CCCCTGCAAGCATGTTTTCCACAAATCCTGTGTTGATCCCTGGCTTAGTGAACATTGTACCTGTCCTATGTGCAAACTTA
ATATCTTGAAGGCCCTGGGAATTGTGCCAAATTTGCCATGTACAGATAACGTAGCATTTGATATGGAAAGGCTCACCAGA
ACCCAAGCAGTTAACCGAAGATCAGCCCTAGGTGACCTCGCCAGTGACAACTCCCTTGGCCTGGAGCCACTTCGAACTTC
GGGGATCTCGCCTCTTCCTCAGGATGGGGAGCTCACTCCTAGAACGGGAGAGATCAACATTGCAGTAACAAAAGAATGGT
TTATTATTGCCAGTTTTGGCCTCCTCAGTGCTCTCACACTCTGCTACATGATCATCAGAGCCACAGCTAGCTTGAATGCT
AATGAGGTAGAATGGTTTTGA
CAGGCACTGGAGATATTATTGCTGTCATGATTACAGAATTGAGGGGTAAAGATATTTTGAGTTATCTGGAGAAAAACATC
TCTGTTCAAATGACAATAGCTGTTGGAACTCGAATGCCGCCAAAGAACTTCAGCCGTGGCTCTCTAGTCTTCGTGTCAAT
ATCCTTTATTGTTTTGATGATTATTTCTTCAGCATGGCTTATATTCTACTTCATTCAGAAGATCAGATACACAAATGCCC
GGGACAGAAACCAGCGTCGTCTTGGAGATGCAGCCAAGAAAGCCATCAGCAAATTGACAACCAGAACAGTCAAAAAGGGT
GATAAGGAAACAGACCCAGACTTTGATCACTGTGCAGTCTGCATAGAGAGCTATAAGCAGAATGATGTTGTCCGGATTCT
CCCCTGCAAGCATGTTTTCCACAAATCCTGTGTTGATCCCTGGCTTAGTGAACATTGTACCTGTCCTATGTGCAAACTTA
ATATCTTGAAGGCCCTGGGAATTGTGCCAAATTTGCCATGTACAGATAACGTAGCATTTGATATGGAAAGGCTCACCAGA
ACCCAAGCAGTTAACCGAAGATCAGCCCTAGGTGACCTCGCCAGTGACAACTCCCTTGGCCTGGAGCCACTTCGAACTTC
GGGGATCTCGCCTCTTCCTCAGGATGGGGAGCTCACTCCTAGAACGGGAGAGATCAACATTGCAGTAACAAAAGAATGGT
TTATTATTGCCAGTTTTGGCCTCCTCAGTGCTCTCACACTCTGCTACATGATCATCAGAGCCACAGCTAGCTTGAATGCT
AATGAGGTAGAATGGTTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 27 .48 RPM |
| SRP014902_testis | 61 .39 RPM |
| SRP018856_adipose | 210 .28 RPM |
| SRP018288_kidney | 47 .18 RPM |
| SRP018288_lung | 75 .86 RPM |
| SRP018288_liver | 73 .88 RPM |
| SRP018288_heart | 32 .77 RPM |
| SRP035408_liver | 40 .39 RPM |
| SRP035408_brain | 20 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Loxodonta africana | ENSLAFG00000008735 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001941 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012551 | within_species_paralog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000017906 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_150 | 81.02 | 99.63 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_253 | 76.62 | 56.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sscr_254 | 76.62 | 64.71 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000014013 retrocopies