Parental gene: | HSF2BP, ENSSSCG00000022164 |
| Aliases: | None |
| Description: | heat shock transcription factor 2 binding protein [Source:HGNC Symbol;Acc:5226] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 13:216653113..216696962(+) |
>ENSSSCG00000022164
ATGGGCGAGGCTGGCGGCGCTGAGGAGCCGCGCCGGCTCGTGGGGGCGAAGGAAGAGTTTGTCAGGGTGAGGAAGAAGGA
CCTGGAGCGCCTGACCACCGAGGTGATGCAGATTCGGGACTTCCTGCCCCGGATACTCAACGGGGACGTGCTGGAGAGCT
TCCAGAAGCTGAAGATGCTGGAAAAAAACCTGGAAAGGAAAGAGCAAGAATTGGAGCAACTGCGCATGGATTGTGAGCAC
TTCAAAGCCCGCCTGGAGTCTGTGCAAGCGGACAGCGTGCGAGAGAAGAAGGAGAAGCTGGCTCTTCGACAGCAGTTGAA
TGAAGCAAAGCAGCAGCTCCTGCAGCAGGCAGAGTATTGCACAGAAATGGGGGCAGCAGCCTGTACCATTTTGTGGGGCG
TCTCCAGCAGCGAGGAAGTGGTCAAAGCCATCCTGGGAGGCGATAAAGCTGTGAAGTTTTTCAGCATCACTGGTCAGACA
ATGGAGAGTTTTGTGAAGTCACTGGATGGGGATGCCAAGGAGCTGGACTCGGATGAAAATCAGTTTGTTTTCGCTTTGGC
CGGAATCGTCACGAATGTTGCTGCCATAGCTTGTGGCCGTGAGTTCCTGGTCACCTCCAGTCGGGTGCTCCTGGACACCA
TACTGCAGCTTCTGGGGGACCTGAAGCCAGGACAGTGTACCCGCCTCAAAGTGTTAATGCTGATGGCCCTGTACAACGTG
AGCATCAACCTGAACGGCCTGAAGTACATCAGCGAGAGCCCAGGCTTCATCCCGCTGCTGTGGTGGCTTTTGAGCGTCTG
TGACACACGCGGAATCATCCGGGAAGACCTCCAGCCAGTGCGGTGCCCTCCCTCCTCTGGGAGCAGCGCAGGGCCTCGCG
TGCCGTCCGAGGCTCAGGACGCGGGTCCAGGGAAGCCCCGTCGGTGA
ATGGGCGAGGCTGGCGGCGCTGAGGAGCCGCGCCGGCTCGTGGGGGCGAAGGAAGAGTTTGTCAGGGTGAGGAAGAAGGA
CCTGGAGCGCCTGACCACCGAGGTGATGCAGATTCGGGACTTCCTGCCCCGGATACTCAACGGGGACGTGCTGGAGAGCT
TCCAGAAGCTGAAGATGCTGGAAAAAAACCTGGAAAGGAAAGAGCAAGAATTGGAGCAACTGCGCATGGATTGTGAGCAC
TTCAAAGCCCGCCTGGAGTCTGTGCAAGCGGACAGCGTGCGAGAGAAGAAGGAGAAGCTGGCTCTTCGACAGCAGTTGAA
TGAAGCAAAGCAGCAGCTCCTGCAGCAGGCAGAGTATTGCACAGAAATGGGGGCAGCAGCCTGTACCATTTTGTGGGGCG
TCTCCAGCAGCGAGGAAGTGGTCAAAGCCATCCTGGGAGGCGATAAAGCTGTGAAGTTTTTCAGCATCACTGGTCAGACA
ATGGAGAGTTTTGTGAAGTCACTGGATGGGGATGCCAAGGAGCTGGACTCGGATGAAAATCAGTTTGTTTTCGCTTTGGC
CGGAATCGTCACGAATGTTGCTGCCATAGCTTGTGGCCGTGAGTTCCTGGTCACCTCCAGTCGGGTGCTCCTGGACACCA
TACTGCAGCTTCTGGGGGACCTGAAGCCAGGACAGTGTACCCGCCTCAAAGTGTTAATGCTGATGGCCCTGTACAACGTG
AGCATCAACCTGAACGGCCTGAAGTACATCAGCGAGAGCCCAGGCTTCATCCCGCTGCTGTGGTGGCTTTTGAGCGTCTG
TGACACACGCGGAATCATCCGGGAAGACCTCCAGCCAGTGCGGTGCCCTCCCTCCTCTGGGAGCAGCGCAGGGCCTCGCG
TGCCGTCCGAGGCTCAGGACGCGGGTCCAGGGAAGCCCCGTCGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 12 .21 RPM |
| SRP014902_testis | 26 .17 RPM |
| SRP018856_adipose | 41 .87 RPM |
| SRP018288_kidney | 10 .93 RPM |
| SRP018288_lung | 8 .04 RPM |
| SRP018288_liver | 5 .12 RPM |
| SRP018288_heart | 7 .28 RPM |
| SRP035408_liver | 21 .05 RPM |
| SRP035408_brain | 27 .95 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000009866 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000011783 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_868 | 86.36 | 57.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000022164 retrocopies