Parental gene: | POGK, ENSTSYG00000011078 |
| Aliases: | None |
| Description: | pogo transposable element with KRAB domain [Source:HGNC Symbol;Acc:18800] |
| Organism: | Tarsier (Tarsius syrichta) |
| Coordinates: | GeneScaffold_4348:936..5829(+) |
>ENSTSYG00000011078
ATGGAGTCCACAACCTACCCTCTCAATTTGAACCTGAAAGTAGAGGAAGAGGAAGAAGAGATTCAGAGCCGGGAACTGGA
GGATGGCCCCGCAGATATGCAGAAAGTACGNNNNNNNNNNNNNNNNNNNNNNGTGCCGGCCCTATTTGATGAGGTGGCCA
TATATTTTTCCGATGAGGAGTGGGAAGTTTTGACGGAGCAACAAAAGGCCCTCTACCGGGAAGTCATGAGGATGAATTAT
GAAACTGTCCTGTCCCTGGAATTCCCATTCCCTAAGCCAGACATGATCACCCGCCTGGAAGGGGAGGAGGAGTCTCAGAA
TTCTGACGAGTGGCAGCTCCATGGAGGCACCTTTGCAGAAAATGAAGAATCTGATGTGAAGCCTTCAGAGTGGGCGAGCC
CAGTGAACCCCACCTCGCAGTTTCCTCAGCCCCAGCACCTAGACAGCCTCGGTCTCCGTTTGCCTCGAGACATCGCAGAG
CTGCCGGAGTGGAGTGAGGGGTACCCCTTCTACATGGCAATGGGCTTCCCAGGGTATGACCTCTCGGCTGACGACATAGC
TGGGAAGTTCCAGTTCAGCCGGGGCATGCGCCGCAGTTACGACGCAGGCTTCAAGCTCATGGTGGTAGAGTATGCTGAGA
GCACCAACAACTGCCAAGCCGCCAAGCAGTTTGGGGTGTTGGAGAAAAACGTTAGAGACTGGCGCAAGGTAAAGCCGCAG
CTCCAGAACGCCCATGCCATGCGGCGGGCATTCCGAGGCCCCAAGAACGGGAGATTTGCTCTGGTGGACCAGCGGGTGGC
CGAATACGTCAGATACATGCAGGCCAAAGGGGACCCCATCACCAGGGAGGCCATGCAGCTGAAGGCTCTCGAAATCGCCC
AGGAGATGAATATTCCAGAGAAAGGGTTCAAGGCAAGCTTGGGTTGGTGCCGAAGAATGATGAGAAGATATGACCTGTCT
CTGAGGCATAAAGTGCCAGTGCCTCAGCACCTGCCAGAAGACCTGACTGAGAAGCTCGTCACTTACCAGCGGAGTGTTCT
GGCTCTGCGCAGGGCACATGACTACGAGGTGGCTCAGATGGGCAATGCAGATGAGACGCCAATTTGTTTAGAGGTGCCGT
CTCGGGTGACTGTCGACAACCAGGGCGAAAAGCCTGTCTTGGTGAAGACACCAGGCAGGGAAAAACTGAAAATCACAGCA
ATGCTTGGCGTCTTGGCTGATGGGAGGAAATTACCTCCATACATCATTTTAAGAGGAACGTATATCCCTCCTGGAAAGTT
TCCCAGTGGGATGGAAATCCGCTGTCACCGGTACGGGTGGATGACTGAGGACCTGATGCAGGACTGGCTGGAAGTAGTGT
GGAGACGGAGGACTGGGGCAGTGCCCAAGCAGCGAGGGATGCTGATCTTGAACGGCTTCCGGGGCCATGCCACCGACTCT
GTGAAGAACTCCATGGAGAGCATGAACACCGACATGGTGATCATCCCTGGGGGTCTGACCTCGCAGCTCCAGGTGCTGGA
TGTGGTGGTCTACAAACCGCTGAATGACAGCGTGCGGGCCCAGTACTCCAACTGGCTTCTGGCTGGGAACCTGGCCCTGA
GCCCAACTGGGAATGCCAAGAAGCCACCCCTGGGCCTTTTCCTGGAGTGGGTCATGGTCGCGTGGAATAGCATCTCAAGC
GAGTCCATTGTCCAAGGGTTCAAGAAGTGCCACATCTCCAGTAACTTGGAGGAGGAAGATGACGTTCTGTGGGAAATTGA
GAGTGAGTTGCCAGGAGGAGGTGAACCACCAAAAGAATATGATGCTGAAGCCATGACTGTGGGCAACTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000033914 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000006822 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000014393 | ortholog_one2many | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000014539 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000040596 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007615 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_tsyr_1983 | 81.41 | 57.64 | Please wait, loading  |
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Download FASTA sequences of all ENSTSYG00000011078 retrocopies