Parental gene: | OPUNC01G35260 |
| Aliases: | None |
| Description: | None |
| Organism: | Red rice (Oryza punctata) |
| Coordinates: | 1:38407732..38409139(+) |
>OPUNC01G35260
ATGGAGCCTCCTCAACTCGACGGCCAGTGCGGGGGCGAGCCACCAGCATCCGTGGAGGAAGTCGCGTTCATGCCGTACGC
CACCGCGGACTCCTCGCTGCGCGCCATGGCCGGTCAGGCCGAGGGCTTCGGCCGCCACGCCATCGGCGGCCTCCACGGCG
ACGTCTACCACGTCACGACCCTGGAGGACGACGGGGACGGGTCGCTCCGGGAGGGTTGCCGGAGGCGCGAGCCGCTGTGG
ATCGTCTTCGACGTGTCTGGCACCATCCACCTCTCGACGGGACTACGCGTGTCGTCGTACAAGACCATCGACGGGCGCGG
GCAGCGGGTGGTGCTTTCCGGCAAGGGGCTCCAGCTGCGGGAGTGCGAGCACGTGATCGTCTGCAACCTCGAGGTGGAGG
GGTGCCGCGGTCGCGACGCCGACGCCGTGGCGGTGAAGCCCGGGTCGAGGCACGTTTGGATCGACCGGTGCGGCCTTCGC
GGCTGCGGCGACGGCCTCGTCGACGTCACCAGGGGAAGCACGGACGTGACCGTGTCCAGGTGCCGCTTCTCTGCGCACGA
CAAAGCCGTGCTGATCGGCGGCAGCGCCGGCCACGTCGAGGACCGCGCCATCCGGGTGACCATCCACCACTGCCTCTTCG
ACGGCACGCGGCAGAGGCACCCGCGCGTCCGCTTCGGCAGGGTGCACCTCTACAACAACTACACCAGGGGCTGGGGCATT
TACGCTGTCTGTGCCAGCGTCGAGTCACAGATTGTATCCCAGTGCAACATTTACGAGGCAGGGGAGAAGAAGAAAGTCTT
CAAGTACATGACAGAACAGGCGGCAGACAGAGACCGGAGTTCAACCGGGCTCATCCGTTCTGAAGGCGACCTGTTCCTGA
ACGGTGCAGAGTGCACTGCTCATGATTCAGAATGTGCGGCAGATGAGCTGTGGGACTTCAAGGTCCAGGATTTGGATTTC
TACCAGTCTTGTTCGGTCCAACCAGCGTCAATGGCGCTCAAGGAGCTACTGGTGTGCTTCACCGGCTGGCAGCCAGTTCC
GCTGCCGGAAGACATTTGTCTCGAAGAGAAAACTGATTCTGCTCCTGCTGACACTACCGCTTGA
ATGGAGCCTCCTCAACTCGACGGCCAGTGCGGGGGCGAGCCACCAGCATCCGTGGAGGAAGTCGCGTTCATGCCGTACGC
CACCGCGGACTCCTCGCTGCGCGCCATGGCCGGTCAGGCCGAGGGCTTCGGCCGCCACGCCATCGGCGGCCTCCACGGCG
ACGTCTACCACGTCACGACCCTGGAGGACGACGGGGACGGGTCGCTCCGGGAGGGTTGCCGGAGGCGCGAGCCGCTGTGG
ATCGTCTTCGACGTGTCTGGCACCATCCACCTCTCGACGGGACTACGCGTGTCGTCGTACAAGACCATCGACGGGCGCGG
GCAGCGGGTGGTGCTTTCCGGCAAGGGGCTCCAGCTGCGGGAGTGCGAGCACGTGATCGTCTGCAACCTCGAGGTGGAGG
GGTGCCGCGGTCGCGACGCCGACGCCGTGGCGGTGAAGCCCGGGTCGAGGCACGTTTGGATCGACCGGTGCGGCCTTCGC
GGCTGCGGCGACGGCCTCGTCGACGTCACCAGGGGAAGCACGGACGTGACCGTGTCCAGGTGCCGCTTCTCTGCGCACGA
CAAAGCCGTGCTGATCGGCGGCAGCGCCGGCCACGTCGAGGACCGCGCCATCCGGGTGACCATCCACCACTGCCTCTTCG
ACGGCACGCGGCAGAGGCACCCGCGCGTCCGCTTCGGCAGGGTGCACCTCTACAACAACTACACCAGGGGCTGGGGCATT
TACGCTGTCTGTGCCAGCGTCGAGTCACAGATTGTATCCCAGTGCAACATTTACGAGGCAGGGGAGAAGAAGAAAGTCTT
CAAGTACATGACAGAACAGGCGGCAGACAGAGACCGGAGTTCAACCGGGCTCATCCGTTCTGAAGGCGACCTGTTCCTGA
ACGGTGCAGAGTGCACTGCTCATGATTCAGAATGTGCGGCAGATGAGCTGTGGGACTTCAAGGTCCAGGATTTGGATTTC
TACCAGTCTTGTTCGGTCCAACCAGCGTCAATGGCGCTCAAGGAGCTACTGGTGTGCTTCACCGGCTGGCAGCCAGTTCC
GCTGCCGGAAGACATTTGTCTCGAAGAGAAAACTGATTCTGCTCCTGCTGACACTACCGCTTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Oryza sativa indica | BGIOSGA004758 | ortholog_one2one | 1 retrogene | |
| Leersia perrieri | LPERR01G31380 | ortholog_one2one | 1 retrogene | |
| Oryza meridionalis | OMERI01G33590 | ortholog_one2one | 1 retrogene | |
| Oryza nivara | ONIVA01G41460 | ortholog_one2one | 1 retrogene | |
| Oryza punctata | OPUNC06G17690 | within_species_paralog | 1 retrogene | |
| Oryza glaberrima | ORGLA01G0303100 | ortholog_one2one | 1 retrogene | |
| Oryza sativa japonica | OS01G0837100 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opun_9 | 73.99 | 74.39 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all OPUNC01G35260 retrocopies